Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0026679

Physical Location & Seq

Genomic Coordinates Reverse (-)

10385714 .. 10385998

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG139400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGACAACGTACTTCTTCGCACATATGGATGATAAGCTCTTGGACGCCATATGCGAACGCCTCAAGCCCTCAAGTCATCCTGTCGAGGCATTTGCACTCCAAGCTGGAGACCTCAAGTATGTTGCGAGTCAATTTAAGCGCCTTCACAGCAAAAAACTGCTGCACGCATTTAGGTACTACTCCCACCAGTGGAGGACTTCAGCGTGTTTTATACAAGTTGCGTGGAGACGGTACAAAAAGAGAAAGCTGGCATTGGATTTGATAACTGATAAGGAGTACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

94

Amino Acids

11.31

Weight (kDa)

9.66

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026679)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0193861
rosa_samantha	Rh7BG139400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	4 cut(s)	11, 176, 233, 278
AfiI	CCNNNNNNNGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	37, 104, 247
AluI	AGCT	3 cut(s)	37, 104, 247
Alw26I	GTCTC	2 cut(s)	102, 220
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BcoDI	GTCTC	2 cut(s)	102, 220
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
BmcAI	AGTACT	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	3 cut(s)	47, 55, 98
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	34, 76
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	102, 220
BsmBI	CGTCTC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	165, 249
BstF5I	GGATG	2 cut(s)	34, 76
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	102, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 147
BstV1I	GCAGC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	34, 76
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	165, 249
CfoI	GCGC	1 cut(s)	141
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	4 cut(s)	10, 175, 232, 277
CspCI	CAANNNNNGTGG	2 cut(s)	203, 238
CviJI	RGCY	4 cut(s)	37, 67, 104, 247
CviKI_1	RGCY	4 cut(s)	37, 67, 104, 247
CviQI	GTAC	4 cut(s)	10, 175, 232, 277
Eco31I	GGTCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	220
FaiI	YATR	6 cut(s)	24, 26, 50, 52, 120, 212
FauNDI	CATATG	2 cut(s)	24, 50
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	41, 63
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	142
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	45
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	2 cut(s)	95, 163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 147
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	45
HspAI	GCGC	1 cut(s)	139
LpnPI	CCDG	4 cut(s)	90, 93, 200, 233
Lsp1109I	GCAGC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	8
MboII	GAAGA	1 cut(s)	7
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	5 cut(s)	71, 79, 79, 122, 186
MseI	TTAA	2 cut(s)	135, 283
MslI	CAYNNNNRTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	101, 147
NdeI	CATATG	2 cut(s)	24, 50
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
RsaI	GTAC	4 cut(s)	11, 176, 233, 278
RsaNI	GTAC	4 cut(s)	10, 175, 232, 277
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	135, 283
SatI	GCNGC	1 cut(s)	161
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	136
SetI	ASST	6 cut(s)	11, 39, 106, 114, 176, 249
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	62, 70, 113
SmoI	CTYRAG	3 cut(s)	62, 70, 113
Sse9I	AATT	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	131
TatI	WGTACW	1 cut(s)	276
Tru1I	TTAA	2 cut(s)	135, 283
Tru9I	TTAA	2 cut(s)	135, 283
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	1 cut(s)	160
TspRI	CASTG	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.