RchiOBHm_Chr7g0194761

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030427
Physical Location & Seq
Reverse (-)
12786274 .. 12787000
727 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGTCACTATCATATATTCTAAATAATGTTTCAGTTACTTGGATCATAATCTACCTACCTAGGTTAATGGAGCAATATTGCAACATTGTCGTAATTCTTTTTTCATTTTTTCTTTCAGGTATCTCATTTGAAGCAAAGTATGGCATAGGGGTAGGCGTGACCCTTCCAGTATTTCTGTTCCTTGTCTGTTTTTTGACCGGTAGAGAAAGGCACGTGGCCATCACTGAATTATCCGCCGTAACCAATGGACAGGTACAGCCTCTACCTGTAATTGGAATGGGTCTTGATCGTCGGACCCTCGAGTCATATCCCAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

106

Amino Acids

11.9

Weight (kDa)

6.55

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030427)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0194761
rosa_samantha Rh7DG147000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 301
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 216
AcvI CACGTG 1 cut(s) 214
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 272
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 131
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 1 cut(s) 216
AsiGI ACCGGT 1 cut(s) 197
AspA2I CCTAGG 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 294
AvrII CCTAGG 1 cut(s) 59
BalI TGGCCA 1 cut(s) 218
BbrPI CACGTG 1 cut(s) 214
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BfaI CTAG 1 cut(s) 60
BlnI CCTAGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 167
BshFI GGCC 1 cut(s) 218
BshTI ACCGGT 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 272
BsnI GGCC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 299
Bsp143I GATC 2 cut(s) 42, 286
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 296
BspPI GGATC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 42, 286
BssT1I CCWWGG 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 214
BstKTI GATC 2 cut(s) 45, 289
BstMBI GATC 2 cut(s) 42, 286
BsuRI GGCC 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 254
CspAI ACCGGT 1 cut(s) 197
CviJI RGCY 2 cut(s) 218, 259
CviKI_1 RGCY 2 cut(s) 218, 259
CviQI GTAC 1 cut(s) 254
DpnI GATC 2 cut(s) 44, 288
DpnII GATC 2 cut(s) 42, 286
DrdI GACNNNNNNGTC 1 cut(s) 301
DseDI GACNNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 216
EciI GGCGGA 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 294
Eco72I CACGTG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaiI YATR 6 cut(s) 13, 15, 47, 141, 146, 307
FspBI CTAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 218
HapII CCGG 1 cut(s) 198
HinfI GANTC 1 cut(s) 302
HpaII CCGG 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 213
Kzo9I GATC 2 cut(s) 42, 286
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 102, 180, 211, 236, 279
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 4 cut(s) 3, 34, 157, 238
MalI GATC 2 cut(s) 44, 288
MboI GATC 2 cut(s) 42, 286
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 3 cut(s) 93, 227, 270
MluNI TGGCCA 1 cut(s) 218
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 2 cut(s) 270, 308
Mox20I TGGCCA 1 cut(s) 218
MscI TGGCCA 1 cut(s) 218
MseI TTAA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 218
MspI CCGG 1 cut(s) 198
NdeII GATC 2 cut(s) 42, 286
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 2 cut(s) 3, 157
PaeR7I CTCGAG 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 197
PleI GAGTC 1 cut(s) 310
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 1 cut(s) 310
Ppu21I YACGTR 1 cut(s) 214
PspCI CACGTG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 294
PspXI VCTCGAGB 1 cut(s) 299
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 2 cut(s) 42, 286
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 1 cut(s) 311
SetI ASST 7 cut(s) 57, 61, 65, 121, 216, 255, 268
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 3 cut(s) 93, 227, 270
SsiI CCGC 1 cut(s) 234
SspI AATATT 1 cut(s) 77
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 59
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 93, 227, 270
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 3, 157
Tsp45I GTSAC 2 cut(s) 3, 157
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 299
XmaJI CCTAGG 1 cut(s) 59
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.