Rh7DG147000

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0030427
Physical Location & Seq
Reverse (-)
12594607 .. 12595132
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG147000.1

Sequence Viewer

Length: 288 bp
ATGCCGCCGGACGACTACCGAAGCTCTGTGATTTCAACAGCTTTGGCTCCGAGCCTCCGAGGGATCTTGACTGGGGTGTTCAGTATCTCATTTGAAGCAAAGTATGGCATAGGGGTAGGCGTGACCGTTCCAGTATTTCTGTTCCTTTTGTCTGTTTTTTTGACCGGTAGAGAAAGGCACGTGGCCATCACTGAATTATCCGCCGTAACCAATGGACAGGTACAGCCTCTACCTGTAATTGGAATGGGTCTTGATCGTCGGACCCTCGAGTCATATCCCAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

95

Amino Acids

10.24

Weight (kDa)

6.55

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030427)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0194761
rosa_samantha Rh7DG147000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 268
AciI CCGC 2 cut(s) 5, 201
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 183
AcvI CACGTG 1 cut(s) 181
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 239
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 2 cut(s) 36, 95
AluBI AGCT 2 cut(s) 24, 41
AluI AGCT 2 cut(s) 24, 41
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 183
AsiGI ACCGGT 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 261
BalI TGGCCA 1 cut(s) 185
BbrPI CACGTG 1 cut(s) 181
BccI CCATC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 261
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 48, 263
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 76, 131
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 2 cut(s) 76, 131
BshFI GGCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 8, 165
BslI CCNNNNNNNGG 1 cut(s) 239
BsnI GGCC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 266
Bsp143I GATC 2 cut(s) 63, 253
BspACI CCGC 2 cut(s) 5, 201
BspANI GGCC 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 48, 263
BspPI GGATC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 76, 131
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 63, 253
Bst4CI ACNGT 1 cut(s) 127
BstBAI YACGTR 1 cut(s) 181
BstKTI GATC 2 cut(s) 66, 256
BstMBI GATC 2 cut(s) 63, 253
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 221
CspAI ACCGGT 1 cut(s) 164
CviJI RGCY 6 cut(s) 24, 41, 47, 54, 185, 226
CviKI_1 RGCY 6 cut(s) 24, 41, 47, 54, 185, 226
CviQI GTAC 1 cut(s) 221
DpnI GATC 2 cut(s) 65, 255
DpnII GATC 2 cut(s) 63, 253
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 183
EciI GGCGGA 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 261
Eco72I CACGTG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 266
FaiI YATR 3 cut(s) 105, 110, 274
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 8, 165
HinfI GANTC 1 cut(s) 269
HpaII CCGG 2 cut(s) 8, 165
Hpy188I TCNGA 3 cut(s) 51, 59, 261
Hpy188III TCNNGA 2 cut(s) 67, 251
Hpy99I CGWCG 1 cut(s) 261
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 180
Kzo9I GATC 2 cut(s) 63, 253
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 6 cut(s) 21, 57, 144, 178, 203, 246
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 121, 205
MalI GATC 2 cut(s) 65, 255
MboI GATC 2 cut(s) 63, 253
MflI RGATCY 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 2 cut(s) 194, 237
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 4 cut(s) 53, 65, 237, 275
Mox20I TGGCCA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 2 cut(s) 8, 165
NdeII GATC 2 cut(s) 63, 253
NlaIV GGNNCC 2 cut(s) 48, 263
NmuCI GTSAC 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 266
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 277
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 1 cut(s) 277
Ppu21I YACGTR 1 cut(s) 181
PspCI CACGTG 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 48, 263
PspPI GGNCC 1 cut(s) 261
PspXI VCTCGAGB 1 cut(s) 266
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 63, 253
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 278
SetI ASST 5 cut(s) 26, 43, 183, 222, 235
Sfr274I CTCGAG 1 cut(s) 266
SinI GGWCC 1 cut(s) 261
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 194, 237
SsiI CCGC 2 cut(s) 5, 201
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 194, 237
TauI GCSGC 1 cut(s) 7
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 261
XhoI CTCGAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.