RchiOBHm_Chr7g0196561

Belongs to the SNF7 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
14567670 .. 14569535
1866 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGAGAGCAATAGCAACTCATACACAGGCAATGCACGCCCAGTCATCAATTGTTGTTGGCATGAAAGGTGCTAGTATGGCAATGGAAGCTATGAATAAGGTTAATGATGCTGTTCTTGCAGTGGATAATACACTTTTCCTATTCTTTAGATACCACCCTCCAGACGATTACATGTATATCAGAGATGACCCATCTGTCTTATATGTTCATTTTGACAATGAATTGTTGTATTTACTTAAGAGTGCTGGGTTGAAAGCTTTGTGCAATGGTTGCCAGTGGGACTTATTTGGCCACTGTACATAG

Protein Analysis

100

Amino Acids

11.26

Weight (kDa)

5.85

Isoelectric Point (pI)

26.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030492)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0196561
rosa_samantha Rh2DG202100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 289
AfaI GTAC 1 cut(s) 298
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 2 cut(s) 89, 257
AluI AGCT 2 cut(s) 89, 257
AoxI GGCC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 291
BccI CCATC 1 cut(s) 199
BfaI CTAG 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 40, 274
Bse3DI GCAATG 3 cut(s) 36, 87, 271
BseMI GCAATG 3 cut(s) 36, 87, 271
BseNI ACTGG 2 cut(s) 40, 274
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 291
BslFI GGGAC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 296
BspANI GGCC 1 cut(s) 291
BspTI CTTAAG 1 cut(s) 236
BsrDI GCAATG 3 cut(s) 36, 87, 271
BsrGI TGTACA 1 cut(s) 296
BsrI ACTGG 2 cut(s) 40, 274
Bst4CI ACNGT 1 cut(s) 296
BstAFI CTTAAG 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 36
BstMWI GCNNNNNNNGC 5 cut(s) 35, 77, 86, 116, 270
BstNSI RCATGY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 126, 281, 292
Cac8I GCNNGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 61, 172
CviJI RGCY 3 cut(s) 89, 257, 291
CviKI_1 RGCY 3 cut(s) 89, 257, 291
CviQI GTAC 1 cut(s) 297
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 289
FaeI CATG 2 cut(s) 64, 175
FaiI YATR 9 cut(s) 21, 62, 77, 92, 173, 177, 202, 204, 301
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 60, 171
FspBI CTAG 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 291
Hin1II CATG 2 cut(s) 64, 175
HindIII AAGCTT 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 3 cut(s) 34, 119, 264
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 77, 86, 116, 270
Hsp92II CATG 2 cut(s) 64, 175
LpnPI CCDG 5 cut(s) 11, 53, 174, 231, 287
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 72
MfeI CAATTG 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 2 cut(s) 48, 221
MluNI TGGCCA 1 cut(s) 291
MnlI CCTC 1 cut(s) 168
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
MseI TTAA 2 cut(s) 102, 237
Msp20I TGGCCA 1 cut(s) 291
MspCI CTTAAG 1 cut(s) 236
MunI CAATTG 1 cut(s) 48
MwoI GCNNNNNNNGC 5 cut(s) 35, 77, 86, 116, 270
NlaIII CATG 2 cut(s) 64, 175
NspI RCATGY 1 cut(s) 175
PciI ACATGT 1 cut(s) 171
PscI ACATGT 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 245
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 102, 237
SetI ASST 4 cut(s) 70, 91, 102, 259
SfaNI GCATC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 48, 221
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 296
TasI AATT 2 cut(s) 48, 221
TatI WGTACW 1 cut(s) 296
Tru1I TTAA 2 cut(s) 102, 237
Tru9I TTAA 2 cut(s) 102, 237
TscAI CASTG 3 cut(s) 126, 281, 299
TspDTI ATGAA 4 cut(s) 77, 107, 197, 234
TspRI CASTG 3 cut(s) 126, 281, 299
Vha464I CTTAAG 1 cut(s) 236
XceI RCATGY 1 cut(s) 175
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.