Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0030492

Physical Location & Seq

Genomic Coordinates Reverse (-)

18629691 .. 18631500

Gene Structure 1810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG202100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGAGCAATAGCAACTCATACACAGGCAATGCACGCCCAGTCATCAATTGTTGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGGTTAATGATGCTGTTCTTGCAGTGGATAATACACTTGTCCTATTCTTTAGATACCACCCTCCAGACGATTACATGTACATTAGAGATGACCCATCTGTCTTATATGTACATTTTGACATTGAATTGTTGTATTTACTTAAGAGTGTTGGGTTGAAAGCTTTGTGCAATGGTTGCCAGTCGGGACTTATTTGGCCACTGTACATAGACAGGGTGCTGCAGTTTGGGGAGGTGCCACCAGCGAGTTCAAACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

117

Amino Acids

12.97

Weight (kDa)

6.02

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030492)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0196561
rosa_samantha	Rh2DG202100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	290
AfaI	GTAC	3 cut(s)	176, 207, 299
AflII	CTTAAG	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	221, 253, 345
AluBI	AGCT	2 cut(s)	89, 257
AluI	AGCT	2 cut(s)	89, 257
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	86, 313
BalI	TGGCCA	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	98, 300
BccI	CCATC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	236
BisI	GCNGC	2 cut(s)	87, 314
BlsI	GCNGC	2 cut(s)	88, 315
BmiI	GGNNCC	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	40, 274
Bse3DI	GCAATG	3 cut(s)	36, 87, 271
BseMI	GCAATG	3 cut(s)	36, 87, 271
BseNI	ACTGG	2 cut(s)	40, 274
BseXI	GCAGC	2 cut(s)	98, 300
BshFI	GGCC	1 cut(s)	292
BshNI	GGYRCC	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	292
Bsp1407I	TGTACA	3 cut(s)	174, 205, 297
BspANI	GGCC	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	328
BspTI	CTTAAG	1 cut(s)	236
BsrDI	GCAATG	3 cut(s)	36, 87, 271
BsrGI	TGTACA	3 cut(s)	174, 205, 297
BsrI	ACTGG	2 cut(s)	40, 274
Bst4CI	ACNGT	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstAUI	TGTACA	3 cut(s)	174, 205, 297
BstC8I	GCNNGC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 77, 86, 116, 270
BstNSI	RCATGY	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	98, 300
BsuRI	GGCC	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	126, 293
Cac8I	GCNNGC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	175, 206, 298
CviAII	CATG	2 cut(s)	61, 172
CviJI	RGCY	3 cut(s)	89, 257, 292
CviKI_1	RGCY	3 cut(s)	89, 257, 292
CviQI	GTAC	3 cut(s)	175, 206, 298
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	290
FaeI	CATG	2 cut(s)	64, 175
FaiI	YATR	7 cut(s)	21, 62, 92, 173, 202, 204, 302
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	2 cut(s)	60, 171
Fnu4HI	GCNGC	2 cut(s)	87, 314
Fsp4HI	GCNGC	2 cut(s)	87, 314
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	2 cut(s)	87, 314
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	64, 175
HindIII	AAGCTT	1 cut(s)	255
Hpy188III	TCNNGA	2 cut(s)	161, 279
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	4 cut(s)	34, 119, 264, 316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 77, 86, 116, 270
Hsp92II	CATG	2 cut(s)	64, 175
LpnPI	CCDG	6 cut(s)	11, 53, 174, 287, 292, 348
Lsp1109I	GCAGC	2 cut(s)	98, 300
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	72
MfeI	CAATTG	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	292
MluCI	AATT	2 cut(s)	48, 221
MluNI	TGGCCA	1 cut(s)	292
MnlI	CCTC	2 cut(s)	168, 319
Mox20I	TGGCCA	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	292
MseI	TTAA	2 cut(s)	102, 237
Msp20I	TGGCCA	1 cut(s)	292
MspCI	CTTAAG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	48
MwoI	GCNNNNNNNGC	5 cut(s)	35, 77, 86, 116, 270
NlaIII	CATG	2 cut(s)	64, 175
NlaIV	GGNNCC	1 cut(s)	330
NspI	RCATGY	1 cut(s)	175
PciI	ACATGT	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	88, 315
PscI	ACATGT	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	318
RsaI	GTAC	3 cut(s)	176, 207, 299
RsaNI	GTAC	3 cut(s)	175, 206, 298
SaqAI	TTAA	2 cut(s)	102, 237
SatI	GCNGC	2 cut(s)	87, 314
SetI	ASST	5 cut(s)	70, 91, 102, 259, 330
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	48, 221
SspMI	CTAG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	297
TasI	AATT	2 cut(s)	48, 221
TatI	WGTACW	3 cut(s)	174, 205, 297
Tru1I	TTAA	2 cut(s)	102, 237
Tru9I	TTAA	2 cut(s)	102, 237
TscAI	CASTG	2 cut(s)	126, 300
TseI	GCWGC	2 cut(s)	86, 313
TspDTI	ATGAA	2 cut(s)	77, 107
TspRI	CASTG	2 cut(s)	126, 300
Vha464I	CTTAAG	1 cut(s)	236
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.