Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030479

Physical Location & Seq

Genomic Coordinates Reverse (-)

24787552 .. 24787770

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAAATGAAAGATGGAGAACAGCCTGACAATGCGAATTGCTCTCCTGAGGGGTTAGTCCGGCAAGTAAAGATGGCAACCAAGAGTGCTGGAATTGAACTTGCAGGAGAGAATGCACTGGAGAGGTATGATTCTGGTGCATATGGACAGGTTTTGGCCACAAGCAGATCAGATTCCAGCAATGCGTTGAGTGCTTTCACATACCTAAGATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

72

Amino Acids

7.73

Weight (kDa)

4.69

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 72	3.3e-26	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030479)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0207441
rosa_samantha	Rh7CG245300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	98, 214
AoxI	GGCC	1 cut(s)	156
AxyI	CCTNAGG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	158
BccI	CCATC	2 cut(s)	8, 67
BpmI	CTGGAG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	123
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	48, 206
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	116
CviJI	RGCY	2 cut(s)	25, 158
CviKI_1	RGCY	2 cut(s)	25, 158
DdeI	CTNAG	2 cut(s)	48, 206
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	48
FaiI	YATR	4 cut(s)	129, 142, 144, 202
FauNDI	CATATG	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	61
HinfI	GANTC	2 cut(s)	131, 173
HpaII	CCGG	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	104, 116, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	48, 206
Kzo9I	GATC	1 cut(s)	167
LpnPI	CCDG	9 cut(s)	39, 60, 74, 75, 90, 104, 120, 134, 190
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	3 cut(s)	37, 93, 214
MluNI	TGGCCA	1 cut(s)	158
MnlI	CCTC	2 cut(s)	43, 117
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	167
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	131, 173
Sau3AI	GATC	1 cut(s)	167
SetI	ASST	3 cut(s)	128, 153, 207
Sse9I	AATT	3 cut(s)	37, 93, 214
TasI	AATT	3 cut(s)	37, 93, 214
TfiI	GAWTC	2 cut(s)	131, 173
TscAI	CASTG	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.