Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0030479

Physical Location & Seq

Genomic Coordinates Reverse (-)

22960639 .. 22960788

Gene Structure 150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGAAATGAAAGATGGAGAACAGCCTGACAATGCGAATTGCTCTCCTGAGGGGTTAGTCCGGCAAGTAAAGATGGCAACCAAGAGTGCTGGAATTGAACTTGCAGGAGAGAGTGCACTGGAGAGGTATGATTCTGGTGCATATGGACAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

50

Amino Acids

5.33

Weight (kDa)

4.44

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 50	1.1e-16	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0030479)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0207441
rosa_samantha	Rh7CG245300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	114
ApaLI	GTGCAC	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	2 cut(s)	8, 67
BpmI	CTGGAG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	123
Bse21I	CCTNAGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	116
CviJI	RGCY	1 cut(s)	25
CviKI_1	RGCY	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	48
FaiI	YATR	3 cut(s)	129, 142, 144
FauNDI	CATATG	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	140
HapII	CCGG	1 cut(s)	61
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	104, 116, 140
HpyF3I	CTNAG	1 cut(s)	48
LpnPI	CCDG	7 cut(s)	39, 60, 74, 75, 90, 104, 120
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	37, 93
MnlI	CCTC	2 cut(s)	43, 117
MspI	CCGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	1 cut(s)	128
SgeI	CNNG	9 cut(s)	38, 59, 73, 77, 94, 102, 113, 117, 131
Sse9I	AATT	2 cut(s)	37, 93
TasI	AATT	2 cut(s)	37, 93
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	123
VneI	GTGCAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.