Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025134

Physical Location & Seq

Genomic Coordinates Forward (+)

26114997 .. 26115724

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGTTTTGGATTGCCAGCTGCTATGGGGGCTGCGGCAGCAAATCCAGGTGCTATTGTTGTCGACATTGATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAAGGTGGAGAATCTTCCTGTCAAAATTCTGCTGTTGAACAATCAACATTTGGGTATGGTTGTTCAGTGGGAGGATCGCTTCTATAAGGCAAACAGGGCTCACACATACCTGGGCAACCCAGCAAATGAGTCTGAGATCTTTCCAAATATGCTGAAGTTCGCAGAAGCTTGTGGGGTACCAGCTGCCCGTGTGACGAAGAAGGAAGACCTCAAAGCGGCAATCCAGAAAATGTTGGACACTCCTGGGCCATACTTGTTGGACGTTATTGTACCACATCAAGAGCATGTGTTGCCTATGATCCCAAGCGGTGGTGCTTTCAAAGATGTGATAACTGAGGGTGATGGAAGAAGAAGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

158

Amino Acids

17.13

Weight (kDa)

5.51

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_C	PF02775	1 - 127	4.2e-38	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025134)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0208801
rosa_samantha	Rh6CG000900 Rh6DG001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	292
AccB7I	CCANNNNNTGG	2 cut(s)	106, 425
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	3 cut(s)	35, 332, 423
AclWI	GGATC	2 cut(s)	198, 409
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	294, 387
AfiI	CCNNNNNNNGG	3 cut(s)	106, 331, 425
AgsI	TTSAA	2 cut(s)	154, 436
AjnI	CCWGG	3 cut(s)	46, 225, 358
AluBI	AGCT	3 cut(s)	20, 284, 299
AluI	AGCT	3 cut(s)	20, 284, 299
AlwI	GGATC	2 cut(s)	198, 409
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	4 cut(s)	20, 32, 38, 299
ApoI	RAATTY	1 cut(s)	141
Asp718I	GGTACC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	86, 467
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	4 cut(s)	7, 19, 50, 286
BccI	CCATC	3 cut(s)	65, 71, 452
BciT130I	CCWGG	3 cut(s)	48, 227, 360
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	6 cut(s)	21, 33, 36, 39, 300, 333
BlsI	GCNGC	6 cut(s)	22, 34, 37, 40, 301, 334
Bme1390I	CCNGG	3 cut(s)	48, 227, 360
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	3 cut(s)	48, 227, 360
BpiI	GAAGAC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	226, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 331, 425
BseBI	CCWGG	3 cut(s)	48, 227, 360
BseDI	CCNNGG	2 cut(s)	226, 359
BseLI	CCNNNNNNNGG	3 cut(s)	106, 331, 425
BseMII	CTCAG	2 cut(s)	240, 441
BseXI	GCAGC	4 cut(s)	7, 19, 50, 286
BseYI	CCCAGC	1 cut(s)	235
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	292
BslI	CCNNNNNNNGG	3 cut(s)	106, 331, 425
BsnI	GGCC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	190, 252, 414
BspACI	CCGC	3 cut(s)	35, 332, 423
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	241, 442
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	198, 409
BspT107I	GGYRCC	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	226, 359
BssMI	GATC	3 cut(s)	190, 252, 414
Bst2UI	CCWGG	3 cut(s)	48, 227, 360
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	249, 450
BstKTI	GATC	3 cut(s)	193, 255, 417
BstMBI	GATC	3 cut(s)	190, 252, 414
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 212, 406
BstNI	CCWGG	3 cut(s)	48, 227, 360
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	3 cut(s)	46, 225, 358
BstV1I	GCAGC	4 cut(s)	7, 19, 50, 286
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	293, 386
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	6 cut(s)	20, 32, 215, 284, 299, 364
CviKI_1	RGCY	6 cut(s)	20, 32, 215, 284, 299, 364
CviQI	GTAC	2 cut(s)	293, 386
DdeI	CTNAG	2 cut(s)	249, 450
DpnI	GATC	3 cut(s)	192, 254, 416
DpnII	GATC	3 cut(s)	190, 252, 414
Eco24I	GRGCYC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	290
EcoRII	CCWGG	3 cut(s)	46, 225, 358
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	1 cut(s)	404
FaiI	YATR	9 cut(s)	26, 89, 173, 201, 223, 266, 367, 402, 413
FatI	CATG	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	6 cut(s)	21, 33, 36, 39, 300, 333
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	6 cut(s)	21, 33, 36, 39, 300, 333
GluI	GCNGC	6 cut(s)	21, 33, 36, 39, 300, 333
GsaI	CCCAGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	364
Hin1II	CATG	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	2 cut(s)	127, 245
HphI	GGTGA	2 cut(s)	86, 467
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	340, 395
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 212, 406
HpyF3I	CTNAG	2 cut(s)	249, 450
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	1 cut(s)	404
KpnI	GGTACC	1 cut(s)	296
Kzo9I	GATC	3 cut(s)	190, 252, 414
Lsp1109I	GCAGC	4 cut(s)	7, 19, 50, 286
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	307, 470
MalI	GATC	3 cut(s)	192, 254, 416
MboI	GATC	3 cut(s)	190, 252, 414
MboII	GAAGA	5 cut(s)	122, 325, 332, 474, 477
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	2 cut(s)	104, 141
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	330, 354
MnlI	CCTC	3 cut(s)	181, 335, 445
MspA1I	CMGCKG	2 cut(s)	20, 299
MspR9I	CCNGG	3 cut(s)	48, 227, 360
MvaI	CCWGG	3 cut(s)	48, 227, 360
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 212, 406
NdeII	GATC	3 cut(s)	190, 252, 414
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	2 cut(s)	106, 425
PkrI	GCNGC	6 cut(s)	22, 34, 37, 40, 301, 334
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	3 cut(s)	46, 225, 358
PspFI	CCCAGC	1 cut(s)	235
PspGI	CCWGG	3 cut(s)	46, 225, 358
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	2 cut(s)	20, 299
RsaI	GTAC	2 cut(s)	294, 387
RsaNI	GTAC	2 cut(s)	293, 386
SalI	GTCGAC	1 cut(s)	62
SatI	GCNGC	6 cut(s)	21, 33, 36, 39, 300, 333
Sau3AI	GATC	3 cut(s)	190, 252, 414
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	3 cut(s)	48, 227, 360
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	8 cut(s)	22, 52, 123, 228, 286, 301, 327, 381
Sse9I	AATT	2 cut(s)	104, 141
SsiI	CCGC	3 cut(s)	35, 332, 423
StyD4I	CCNGG	3 cut(s)	46, 225, 358
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	63
TasI	AATT	2 cut(s)	104, 141
TauI	GCSGC	2 cut(s)	38, 335
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	4 cut(s)	20, 32, 38, 299
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	188
Van91I	CCANNNNNTGG	2 cut(s)	106, 425
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.