Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0025134

Physical Location & Seq

Genomic Coordinates Forward (+)

147486 .. 148031

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG001000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTGGGCAGCTCAATTTTACAAATATAAGAGGCCTAGACAGTGGTTGACATCAGGAGGTTTAGGAGCTATGGGTTTTGGATTGCCTGCTGCTATTGGGGCAGCTGTGGCAAATCCAGATGCCATTGTTGTTGATATTGATGGTGATGGAAGCTTCATGATGAATGTTCAGGAATTAGCAACTATCAGGGTGGAAAATCTTCCCATTAAGATAATGCTGTTGAATAATCAGCATTTGGGTATGGTTGTTCAATGGGAGGATCGCTTCTATAAGGCGAACAGGGCTCACACTTATTTAGGGAACCCATTAAATGAGTCTGAGATATTCCCTAATATGCTTAAGTTCGCAGAAGCTTGTGGGATACCAGCTGCCCGTGTGACAAAGAAGGAACATCTTAAAGAGGCAATTCAGAAAATGCTGGACACTCCTGGTCCGTACTTGTTGGATGTAATAGTACCTCATCAAGAGCATGTCTTGCCTATGATTCCGAGTGGTGGTGCTTTTAAAGATGTGATAACTGAGGGTGATGGAAGATCATCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

181

Amino Acids

20.03

Weight (kDa)

6.19

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_C	PF02775	1 - 150	1.5e-49	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025134)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0208801
rosa_samantha	Rh6CG000900 Rh6DG001000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	437, 456
AfiI	CCNNNNNNNGG	1 cut(s)	494
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	223, 251
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	6 cut(s)	11, 68, 104, 153, 353, 368
AluI	AGCT	6 cut(s)	11, 68, 104, 153, 353, 368
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	8, 89, 101, 368
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	155, 536
AvaII	GGWCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	286
BbvI	GCAGC	4 cut(s)	20, 76, 113, 355
BccI	CCATC	3 cut(s)	134, 140, 521
BciT130I	CCWGG	1 cut(s)	429
BciVI	GTATCC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	36
BfrI	CTTAAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	4 cut(s)	9, 90, 102, 369
BlsI	GCNGC	4 cut(s)	10, 91, 103, 370
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	2 cut(s)	309, 510
BseXI	GCAGC	4 cut(s)	20, 76, 113, 355
BshFI	GGCC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	494
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	259, 533
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	310, 511
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	267
BspTI	CTTAAG	1 cut(s)	338
BssMI	GATC	2 cut(s)	259, 533
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	318, 519
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	2 cut(s)	262, 536
BstMBI	GATC	2 cut(s)	259, 533
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 107, 281, 475
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	20, 76, 113, 355
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	436, 455
CviAII	CATG	2 cut(s)	157, 470
CviJI	RGCY	8 cut(s)	11, 34, 68, 104, 153, 284, 353, 368
CviKI_1	RGCY	8 cut(s)	11, 34, 68, 104, 153, 284, 353, 368
CviQI	GTAC	2 cut(s)	436, 455
DdeI	CTNAG	2 cut(s)	318, 519
DpnI	GATC	2 cut(s)	261, 535
DpnII	GATC	2 cut(s)	259, 533
DraI	TTTAAA	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	2 cut(s)	160, 473
FaiI	YATR	8 cut(s)	27, 71, 158, 242, 270, 335, 471, 482
FalI	AAGNNNNNCTT	1 cut(s)	523
FatI	CATG	2 cut(s)	156, 469
Fnu4HI	GCNGC	4 cut(s)	9, 90, 102, 369
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	4 cut(s)	9, 90, 102, 369
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	4 cut(s)	9, 90, 102, 369
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	160, 473
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HindIII	AAGCTT	2 cut(s)	151, 351
HinfI	GANTC	2 cut(s)	314, 484
HphI	GGTGA	2 cut(s)	155, 536
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	319, 411, 489
Hpy188III	TCNNGA	5 cut(s)	54, 116, 157, 170, 464
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 107, 281, 475
HpyF3I	CTNAG	2 cut(s)	318, 519
Hsp92II	CATG	2 cut(s)	160, 473
Kzo9I	GATC	2 cut(s)	259, 533
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	4 cut(s)	20, 76, 113, 355
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	261, 535
MboI	GATC	2 cut(s)	259, 533
MboII	GAAGA	2 cut(s)	191, 543
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	3 cut(s)	14, 173, 405
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	6 cut(s)	24, 50, 250, 394, 468, 514
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	5 cut(s)	207, 308, 339, 396, 504
MspA1I	CMGCKG	2 cut(s)	104, 368
MspCI	CTTAAG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	98, 107, 281, 475
NdeII	GATC	2 cut(s)	259, 533
NlaIII	CATG	2 cut(s)	160, 473
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	473
PagI	TCATGA	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	10, 91, 103, 370
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	431
PvuII	CAGCTG	2 cut(s)	104, 368
RsaI	GTAC	2 cut(s)	437, 456
RsaNI	GTAC	2 cut(s)	436, 455
SaqAI	TTAA	5 cut(s)	207, 308, 339, 396, 504
SatI	GCNGC	4 cut(s)	9, 90, 102, 369
Sau3AI	GATC	2 cut(s)	259, 533
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	8 cut(s)	13, 61, 70, 106, 155, 355, 370, 460
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	14, 173, 405
SseBI	AGGCCT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	42
TasI	AATT	3 cut(s)	14, 173, 405
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	5 cut(s)	207, 308, 339, 396, 504
Tru9I	TTAA	5 cut(s)	207, 308, 339, 396, 504
TscAI	CASTG	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	4 cut(s)	8, 89, 101, 368
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	145, 176
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	47
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	431
XceI	RCATGY	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.