Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030482

Physical Location & Seq

Genomic Coordinates Reverse (-)

28113205 .. 28114316

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTTGACTTCCCCCTCAGATCACGACCACAATAACTCCGACCCGATCCGAGCCGCTTCTATAGCTTGTTGCAGGATCTCTAGGATTCAATTCAAAACCTTTACCAGCTCCCCACCTCGCTGGAGTTCCTATGTCGAGGAGTCCCACCGCCAGCGCCGCTCCTGGGACGAGAAGCTCACCTTCAACACTGGACCTACCTTGCCGACGCTATTGGCTGGGAATCTGTCAGCGTCATCTCTGGCATCCAGTGGTTCGAGGTTGGCAACACCACGAAGCTCAGGGTCGATCGGATTTCGTTGGGTACTGGGTATCTGGGATTCTGGGTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

110

Amino Acids

12.15

Weight (kDa)

9.82

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0030482)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0210571
rosa_rugosa	Rorug07G0265200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	159
AciI	CCGC	3 cut(s)	54, 148, 157
AclWI	GGATC	2 cut(s)	40, 83
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	89, 94, 184
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	65, 108, 175, 276
AluI	AGCT	4 cut(s)	65, 108, 175, 276
AlwI	GGATC	2 cut(s)	40, 83
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	2 cut(s)	54, 157
BlsI	GCNGC	2 cut(s)	55, 158
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	3 cut(s)	193, 246, 309
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	30, 291
BseNI	ACTGG	3 cut(s)	193, 246, 309
BseRI	GAGGAG	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	127, 179
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	127, 179
Bsp143I	GATC	4 cut(s)	19, 45, 75, 285
BspACI	CCGC	3 cut(s)	54, 148, 157
BspCNI	CTCAG	2 cut(s)	29, 290
BspPI	GGATC	2 cut(s)	40, 83
BsrBI	CCGCTC	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	193, 246, 309
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	4 cut(s)	19, 45, 75, 285
Bst2UI	CCWGG	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	16, 277
BstF5I	GGATG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	22, 48, 78, 288
BstMBI	GATC	4 cut(s)	19, 45, 75, 285
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 156
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	186, 253
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	2 cut(s)	214, 219
Csp6I	GTAC	1 cut(s)	302
CviJI	RGCY	6 cut(s)	53, 65, 108, 175, 215, 276
CviKI_1	RGCY	6 cut(s)	53, 65, 108, 175, 215, 276
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	16, 277
DpnI	GATC	4 cut(s)	21, 47, 77, 287
DpnII	GATC	4 cut(s)	19, 45, 75, 285
Eco47I	GGWCC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	161
FaiI	YATR	2 cut(s)	62, 132
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	2 cut(s)	127, 179
Fnu4HI	GCNGC	2 cut(s)	54, 157
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	2 cut(s)	54, 157
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	54, 157
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	157
HgaI	GACGC	2 cut(s)	214, 219
HhaI	GCGC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	85, 140, 220, 317
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	19, 40, 50, 290
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 156
HpyF3I	CTNAG	2 cut(s)	16, 277
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	19, 45, 75, 285
LmnI	GCTCC	2 cut(s)	113, 164
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	81
MalI	GATC	4 cut(s)	21, 47, 77, 287
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	4 cut(s)	19, 45, 75, 285
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	25, 126, 130, 249
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	62, 156
NdeII	GATC	4 cut(s)	19, 45, 75, 285
PfeI	GAWTC	3 cut(s)	85, 220, 317
PkrI	GCNGC	2 cut(s)	55, 158
Ple19I	CGATCG	1 cut(s)	288
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	75
PvuI	CGATCG	1 cut(s)	288
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SatI	GCNGC	2 cut(s)	54, 157
Sau3AI	GATC	4 cut(s)	19, 45, 75, 285
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	3 cut(s)	54, 148, 157
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	161
TaqI	TCGA	3 cut(s)	135, 254, 284
TasI	AATT	1 cut(s)	89
TauI	GCSGC	2 cut(s)	56, 159
TfiI	GAWTC	3 cut(s)	85, 220, 317
TscAI	CASTG	2 cut(s)	193, 253
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	193, 253
VpaK11BI	GGWCC	1 cut(s)	191
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.