Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

24987680 .. 25027533

Gene Structure 39854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0265200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCAAATGCAAAGAGCAACCTTAAGGTTCTTGTGGTAGGTGGTACTGGATATATTGGGAGAAGGATTGTTAGTGCCAGCCTAGCACAAGGCTACCCGACTTATGTCCTTCAAAGGCCGGCAACGGAGATTGGCCTCGATATTGAGAAACTACAAATGCTCTTGTCGTTTAAGAAGCAAGGGGCTCATCTCGTGGAGGGTTCGTTTTCTGATATCCAAAGCCTTGTCGATGCCGTGAAACAAGTTGACGTTGTCATTTGCACCATGTCGGGGGTGCATTTCCGGAGTCACAACCTTTTGTTGCAGCTCAAGCTTGTTGAAGCCATTAAACAAGCTGGAAATGTTAAGCGCTTCTTGCCATCAGAGTTTGGTTTGGACCCGGCGCGTATGGGACATGCACTTGAACCAGGAAGAGTAACATTTGATGAGAAAATGGTGGTGAGAAAGGCAATAGAAGACGCCAACATCCCCTTCACCTATGTGTGTGGTGCTGGCTTCGCCGGTTATTTTGCGGGCAATCTCTCTCAGATGGGAACACTTGTTCCTCCGAAGGACAAAGTCCTTATTTATGGAGATGGCAACACTAAAGTATCTTTCATGGACGAAGATGACATCGGAAGCTATACAATCAAGACAATAGATGATCCGCGAACTTGCAACAAAACATTGTATCTTCTTCCGCCCGAAAACCTACTCACTCAAAGACAATTGGTGGACATTTGGGAAAATCTTGTTGGAAAGAAACTAGAGAAAATTTCTCTTTCTAAAGAAGACCTCCTTGCCTCTATGAAAGGTATGGACTATGCAGGCCAGGTCGGGGTGGGGCATTTCTATCACATTTTCTATGAAGGCTCTTTGACAAACTTCGAAATAGGGGAGGAAGGAGAAGAAGCTTCAAAGCTTTATCCAGAAGTGAAATACACCCGCATGGATGAATACTTGAAAATTTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

318

Amino Acids

35.28

Weight (kDa)

5.93

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	9 - 314	1.1e-64	NmrA-like family
Epimerase	PF01370	10 - 119	1.2e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	14 - 164	1.7e-10	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	385, 649
AccIII	TCCGGA	1 cut(s)	282
AciI	CCGC	4 cut(s)	512, 647, 680, 925
AclWI	GGATC	1 cut(s)	638
AcsI	RAATTY	2 cut(s)	753, 945
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	1 cut(s)	46
AfeI	AGCGCT	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	270, 817
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	5 cut(s)	113, 320, 404, 897, 943
AjnI	CCWGG	2 cut(s)	406, 810
AjuI	GAANNNNNNNTTGG	4 cut(s)	455, 487, 717, 749
AleI	CACNNNNGTG	1 cut(s)	479
AloI	GAACNNNNNNTCC	4 cut(s)	525, 526, 557, 558
AluBI	AGCT	6 cut(s)	307, 313, 335, 621, 893, 901
AluI	AGCT	6 cut(s)	307, 313, 335, 621, 893, 901
AlwI	GGATC	1 cut(s)	638
Aor13HI	TCCGGA	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	3 cut(s)	116, 133, 808
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	2 cut(s)	753, 945
AspLEI	GCGC	2 cut(s)	351, 385
AspS9I	GGNCC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	451, 466
AsuII	TTCGAA	1 cut(s)	867
AvaII	GGWCC	1 cut(s)	376
BaeI	ACNNNNGTAYC	2 cut(s)	573, 606
BanII	GRGCYC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	2 cut(s)	462, 777
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	3 cut(s)	367, 523, 569
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	408, 812
BcnI	CCSGG	1 cut(s)	380
BfaI	CTAG	2 cut(s)	83, 746
BfoI	RGCGCY	1 cut(s)	352
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	3 cut(s)	380, 408, 812
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	3 cut(s)	380, 408, 812
BmsI	GCATC	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	104
BpiI	GAAGAC	2 cut(s)	462, 777
Bpu14I	TTCGAA	1 cut(s)	867
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 817
Bse118I	RCCGGY	2 cut(s)	118, 500
Bse1I	ACTGG	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	408, 812
BseGI	GGATG	2 cut(s)	465, 937
BseLI	CCNNNNNNNGG	2 cut(s)	270, 817
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	2 cut(s)	385, 649
BshFI	GGCC	3 cut(s)	118, 135, 810
BsiSI	CCGG	4 cut(s)	119, 283, 380, 501
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	270, 817
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	118, 135, 810
Bsp119I	TTCGAA	1 cut(s)	867
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	643
BspACI	CCGC	4 cut(s)	512, 647, 680, 925
BspANI	GGCC	3 cut(s)	118, 135, 810
BspCNI	CTCAG	1 cut(s)	538
BspEI	TCCGGA	1 cut(s)	282
BspFNI	CGCG	2 cut(s)	385, 649
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	638
BspT104I	TTCGAA	1 cut(s)	867
BspTI	CTTAAG	1 cut(s)	23
BsrFI	RCCGGY	2 cut(s)	118, 500
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	2 cut(s)	118, 500
BssMI	GATC	1 cut(s)	643
BssNI	GRCGYC	1 cut(s)	459
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	2 cut(s)	408, 812
Bst6I	CTCTTC	1 cut(s)	406
BstACI	GRCGYC	1 cut(s)	459
BstAFI	CTTAAG	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	867
BstC8I	GCNNGC	5 cut(s)	79, 120, 493, 514, 808
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	465, 937
BstFNI	CGCG	2 cut(s)	385, 649
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	2 cut(s)	351, 385
BstKTI	GATC	1 cut(s)	646
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 310, 355, 497
BstNI	CCWGG	2 cut(s)	408, 812
BstNSI	RCATGY	1 cut(s)	398
BstPAI	GACNNNNGTC	1 cut(s)	104
BstSCI	CCNGG	3 cut(s)	378, 406, 810
BstUI	CGCG	2 cut(s)	385, 649
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	2 cut(s)	462, 777
BsuRI	GGCC	3 cut(s)	118, 135, 810
BtsCI	GGATG	2 cut(s)	465, 937
Cac8I	GCNNGC	5 cut(s)	79, 120, 493, 514, 808
CfoI	GCGC	2 cut(s)	351, 385
Cfr10I	RCCGGY	2 cut(s)	118, 500
Cfr13I	GGNCC	1 cut(s)	376
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	4 cut(s)	265, 395, 598, 928
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
EciI	GGCGGA	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	376
Eco47III	AGCGCT	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	406, 810
EcoRV	GATATC	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	955
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	4 cut(s)	268, 398, 601, 931
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 762, 794
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	4 cut(s)	264, 394, 597, 927
FauI	CCCGC	2 cut(s)	505, 932
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	2 cut(s)	452, 944
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	2 cut(s)	83, 746
GlaI	GCGC	2 cut(s)	350, 384
GluI	GCNGC	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	118, 135, 810
HapII	CCGG	4 cut(s)	119, 283, 380, 501
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	2 cut(s)	351, 385
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	4 cut(s)	268, 398, 601, 931
Hin6I	GCGC	2 cut(s)	349, 383
HinP1I	GCGC	2 cut(s)	349, 383
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	3 cut(s)	311, 891, 899
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	4 cut(s)	119, 283, 380, 501
HphI	GGTGA	2 cut(s)	451, 466
Hpy166II	GTNNAC	2 cut(s)	247, 715
Hpy188I	TCNGA	5 cut(s)	211, 364, 528, 549, 617
Hpy188III	TCNNGA	3 cut(s)	283, 631, 908
Hpy8I	GTNNAC	2 cut(s)	247, 715
HpyAV	CCTTC	6 cut(s)	57, 119, 481, 544, 842, 875
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	8 cut(s)	11, 261, 277, 304, 398, 657, 806, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 310, 355, 497
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	268, 398, 601, 931
HspAI	GCGC	2 cut(s)	349, 383
Kpn2I	TCCGGA	1 cut(s)	282
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	643
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	83, 746
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	287, 415
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	7 cut(s)	423, 467, 617, 665, 668, 782, 899
MfeI	CAATTG	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	3 cut(s)	707, 753, 945
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	6 cut(s)	146, 190, 555, 785, 793, 871
Mph1103I	ATGCAT	1 cut(s)	955
MroI	TCCGGA	1 cut(s)	282
MroNI	GCCGGC	1 cut(s)	118
MseI	TTAA	4 cut(s)	24, 171, 327, 345
MslI	CAYNNNNRTG	2 cut(s)	479, 926
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	4 cut(s)	119, 283, 380, 501
MspR9I	CCNGG	3 cut(s)	380, 408, 812
MunI	CAATTG	1 cut(s)	707
MvaI	CCWGG	2 cut(s)	408, 812
MvnI	CGCG	2 cut(s)	385, 649
MwoI	GCNNNNNNNGC	4 cut(s)	83, 310, 355, 497
NaeI	GCCGGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	1 cut(s)	643
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	4 cut(s)	268, 398, 601, 931
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	867
OliI	CACNNNNGTG	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	120
PflFI	GACNNNGTC	2 cut(s)	251, 557
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PshAI	GACNNNNGTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	406, 810
PspGI	CCWGG	2 cut(s)	406, 810
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	376
PsyI	GACNNNGTC	2 cut(s)	251, 557
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	2 cut(s)	479, 926
SaqAI	TTAA	4 cut(s)	24, 171, 327, 345
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	1 cut(s)	643
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	3 cut(s)	380, 408, 812
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	867
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	2 cut(s)	479, 926
SmlI	CTYRAG	2 cut(s)	23, 308
SmoI	CTYRAG	2 cut(s)	23, 308
Sse9I	AATT	3 cut(s)	707, 753, 945
SsiI	CCGC	4 cut(s)	512, 647, 680, 925
SspMI	CTAG	2 cut(s)	83, 746
StyD4I	CCNGG	3 cut(s)	378, 406, 810
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	138, 228, 867
TasI	AATT	3 cut(s)	707, 753, 945
Tru1I	TTAA	4 cut(s)	24, 171, 327, 345
Tru9I	TTAA	4 cut(s)	24, 171, 327, 345
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	586, 803, 861, 948
TspGWI	ACGGA	1 cut(s)	140
Tth111I	GACNNNGTC	2 cut(s)	251, 557
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	753, 945
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	2 cut(s)	83, 746
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.