protein modification by small protein conjugation or removal
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TAF1_subA | PF14929 | 66 - 582 | 1.5e-69 | TAF RNA Polymerase I subunit A |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1574 |
| AarI | CACCTGC | 1 cut(s) | 1658 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 752 |
| Acc36I | ACCTGC | 1 cut(s) | 1658 |
| AccB1I | GGYRCC | 2 cut(s) | 84, 140 |
| AccBSI | CCGCTC | 1 cut(s) | 322 |
| AccI | GTMKAC | 2 cut(s) | 122, 1622 |
| AccII | CGCG | 2 cut(s) | 168, 1627 |
| AccIII | TCCGGA | 1 cut(s) | 189 |
| AclWI | GGATC | 3 cut(s) | 1310, 1323, 1729 |
| AcsI | RAATTY | 8 cut(s) | 24, 858, 872, 886, 910, 1813, 1824, 1834 |
| AcuI | CTGAAG | 3 cut(s) | 531, 1484, 1618 |
| AcyI | GRCGYC | 2 cut(s) | 141, 231 |
| AfaI | GTAC | 5 cut(s) | 59, 446, 780, 1085, 1538 |
| AfeI | AGCGCT | 1 cut(s) | 1221 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 45, 214, 267, 1120 |
| AflII | CTTAAG | 1 cut(s) | 1306 |
| AflIII | ACRYGT | 1 cut(s) | 1322 |
| AgsI | TTSAA | 7 cut(s) | 398, 461, 1193, 1212, 1394, 1552, 1833 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1492 |
| AjnI | CCWGG | 1 cut(s) | 355 |
| Alw21I | GWGCWC | 2 cut(s) | 165, 1683 |
| Alw26I | GTCTC | 3 cut(s) | 533, 872, 1029 |
| Alw44I | GTGCAC | 1 cut(s) | 161 |
| AlwI | GGATC | 3 cut(s) | 1310, 1323, 1729 |
| Aor13HI | TCCGGA | 1 cut(s) | 189 |
| Aor51HI | AGCGCT | 1 cut(s) | 1221 |
| AoxI | GGCC | 2 cut(s) | 222, 1176 |
| ApaLI | GTGCAC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 7 cut(s) | 71, 926, 1222, 1252, 1664, 1697, 1755 |
| ApoI | RAATTY | 8 cut(s) | 24, 858, 872, 886, 910, 1813, 1824, 1834 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 183, 1828 |
| AspA2I | CCTAGG | 1 cut(s) | 152 |
| AspLEI | GCGC | 5 cut(s) | 143, 170, 728, 1222, 1608 |
| AspS9I | GGNCC | 1 cut(s) | 1177 |
| AsuC2I | CCSGG | 1 cut(s) | 1115 |
| AsuHPI | GGTGA | 3 cut(s) | 197, 1101, 1682 |
| AsuII | TTCGAA | 4 cut(s) | 550, 565, 1810, 1822 |
| AvrII | CCTAGG | 1 cut(s) | 152 |
| BaeGI | GKGCMC | 2 cut(s) | 87, 165 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1133, 1166 |
| BamHI | GGATCC | 1 cut(s) | 1315 |
| BanI | GGYRCC | 2 cut(s) | 84, 140 |
| BanII | GRGCYC | 1 cut(s) | 1683 |
| BauI | CACGAG | 1 cut(s) | 197 |
| BbsI | GAAGAC | 1 cut(s) | 1238 |
| Bbv12I | GWGCWC | 2 cut(s) | 165, 1683 |
| BbvCI | CCTCAGC | 1 cut(s) | 236 |
| BbvI | GCAGC | 7 cut(s) | 83, 913, 1209, 1264, 1676, 1709, 1742 |
| BccI | CCATC | 2 cut(s) | 328, 1608 |
| BceAI | ACGGC | 1 cut(s) | 103 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 60, 94, 1690, 1724 |
| BciT130I | CCWGG | 1 cut(s) | 357 |
| BclI | TGATCA | 1 cut(s) | 937 |
| BcnI | CCSGG | 1 cut(s) | 1115 |
| BcoDI | GTCTC | 3 cut(s) | 533, 872, 1029 |
| BfaI | CTAG | 4 cut(s) | 153, 657, 1181, 1242 |
| BfmI | CTRYAG | 2 cut(s) | 1250, 1609 |
| BfoI | RGCGCY | 3 cut(s) | 144, 729, 1223 |
| BfrI | CTTAAG | 1 cut(s) | 1306 |
| BfuAI | ACCTGC | 1 cut(s) | 1658 |
| BglII | AGATCT | 1 cut(s) | 825 |
| BlnI | CCTAGG | 1 cut(s) | 152 |
| BmcAI | AGTACT | 1 cut(s) | 1085 |
| Bme1390I | CCNGG | 2 cut(s) | 357, 1115 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1492 |
| BmgT120I | GGNCC | 1 cut(s) | 1177 |
| BmiI | GGNNCC | 4 cut(s) | 86, 142, 259, 1317 |
| BmrFI | CCNGG | 2 cut(s) | 357, 1115 |
| BmrI | ACTGGG | 1 cut(s) | 223 |
| BmuI | ACTGGG | 1 cut(s) | 223 |
| BpiI | GAAGAC | 1 cut(s) | 1238 |
| BpmI | CTGGAG | 1 cut(s) | 1316 |
| Bpu10I | CCTNAGC | 1 cut(s) | 236 |
| Bpu14I | TTCGAA | 4 cut(s) | 550, 565, 1810, 1822 |
| BpuEI | CTTGAG | 1 cut(s) | 1001 |
| BpuMI | CCSGG | 1 cut(s) | 1115 |
| BsaHI | GRCGYC | 2 cut(s) | 141, 231 |
| BsaI | GGTCTC | 2 cut(s) | 533, 872 |
| BsaJI | CCNNGG | 4 cut(s) | 152, 369, 1113, 1532 |
| BsaWI | WCCGGW | 1 cut(s) | 189 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 311, 341, 983, 1013, 1152, 1182 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 45, 214, 267, 1120 |
| Bse118I | RCCGGY | 2 cut(s) | 274, 515 |
| Bse1I | ACTGG | 2 cut(s) | 218, 646 |
| BseAI | TCCGGA | 1 cut(s) | 189 |
| BseBI | CCWGG | 1 cut(s) | 357 |
| BseDI | CCNNGG | 4 cut(s) | 152, 369, 1113, 1532 |
| BseGI | GGATG | 4 cut(s) | 1078, 1132, 1497, 1750 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 45, 214, 267, 1120 |
| BseMII | CTCAG | 5 cut(s) | 250, 321, 699, 1371, 1487 |
| BseNI | ACTGG | 2 cut(s) | 218, 646 |
| BseRI | GAGGAG | 1 cut(s) | 359 |
| BseSI | GKGCMC | 2 cut(s) | 87, 165 |
| BseXI | GCAGC | 7 cut(s) | 83, 913, 1209, 1264, 1676, 1709, 1742 |
| BsgI | GTGCAG | 1 cut(s) | 1725 |
| Bsh1236I | CGCG | 2 cut(s) | 168, 1627 |
| BshFI | GGCC | 2 cut(s) | 224, 1178 |
| BshNI | GGYRCC | 2 cut(s) | 84, 140 |
| BsiHKAI | GWGCWC | 2 cut(s) | 165, 1683 |
| BsiSI | CCGG | 5 cut(s) | 46, 190, 275, 516, 1115 |
| BslFI | GGGAC | 2 cut(s) | 1369, 1593 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 45, 214, 267, 1120 |
| BsmAI | GTCTC | 3 cut(s) | 533, 872, 1029 |
| BsmFI | GGGAC | 2 cut(s) | 1369, 1593 |
| BsnI | GGCC | 2 cut(s) | 224, 1178 |
| Bso31I | GGTCTC | 2 cut(s) | 533, 872 |
| Bsp119I | TTCGAA | 4 cut(s) | 550, 565, 1810, 1822 |
| Bsp1286I | GDGCHC | 3 cut(s) | 87, 165, 1683 |
| Bsp13I | TCCGGA | 1 cut(s) | 189 |
| Bsp143I | GATC | 4 cut(s) | 825, 937, 1315, 1721 |
| BspANI | GGCC | 2 cut(s) | 224, 1178 |
| BspCNI | CTCAG | 5 cut(s) | 249, 322, 698, 1372, 1486 |
| BspEI | TCCGGA | 1 cut(s) | 189 |
| BspFNI | CGCG | 2 cut(s) | 168, 1627 |
| BspHI | TCATGA | 2 cut(s) | 756, 1036 |
| BspLI | GGNNCC | 4 cut(s) | 86, 142, 259, 1317 |
| BspMAI | CTGCAG | 1 cut(s) | 1254 |
| BspMI | ACCTGC | 1 cut(s) | 1658 |
| BspPI | GGATC | 3 cut(s) | 1310, 1323, 1729 |
| BspQI | GCTCTTC | 1 cut(s) | 1104 |
| BspT104I | TTCGAA | 4 cut(s) | 550, 565, 1810, 1822 |
| BspT107I | GGYRCC | 2 cut(s) | 84, 140 |
| BspTI | CTTAAG | 1 cut(s) | 1306 |
| BspTNI | GGTCTC | 2 cut(s) | 533, 872 |
| BsrBI | CCGCTC | 1 cut(s) | 322 |
| BsrFI | RCCGGY | 2 cut(s) | 274, 515 |
| BsrI | ACTGG | 2 cut(s) | 218, 646 |
| BssAI | RCCGGY | 2 cut(s) | 274, 515 |
| BssECI | CCNNGG | 4 cut(s) | 152, 369, 1113, 1532 |
| BssMI | GATC | 4 cut(s) | 825, 937, 1315, 1721 |
| BssNI | GRCGYC | 2 cut(s) | 141, 231 |
| BssSI | CACGAG | 1 cut(s) | 197 |
| BssT1I | CCWWGG | 2 cut(s) | 152, 369 |
| Bst2BI | CACGAG | 1 cut(s) | 197 |
| Bst2UI | CCWGG | 1 cut(s) | 357 |
| Bst4CI | ACNGT | 4 cut(s) | 78, 710, 809, 1536 |
| Bst6I | CTCTTC | 5 cut(s) | 435, 567, 1104, 1111, 1476 |
| BstACI | GRCGYC | 2 cut(s) | 141, 231 |
| BstAFI | CTTAAG | 1 cut(s) | 1306 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1703 |
| BstBI | TTCGAA | 4 cut(s) | 550, 565, 1810, 1822 |
| BstC8I | GCNNGC | 6 cut(s) | 116, 226, 262, 276, 537, 682 |
| BstDEI | CTNAG | 7 cut(s) | 110, 236, 330, 685, 1380, 1473, 1759 |
| BstDSI | CCRYGG | 1 cut(s) | 1532 |
| BstF5I | GGATG | 4 cut(s) | 1078, 1132, 1497, 1750 |
| BstFNI | CGCG | 2 cut(s) | 168, 1627 |
| BstH2I | RGCGCY | 3 cut(s) | 144, 729, 1223 |
| BstHHI | GCGC | 5 cut(s) | 143, 170, 728, 1222, 1608 |
| BstKTI | GATC | 4 cut(s) | 828, 940, 1318, 1724 |
| BstMAI | GTCTC | 3 cut(s) | 533, 872, 1029 |
| BstMBI | GATC | 4 cut(s) | 825, 937, 1315, 1721 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 181, 237, 261, 725, 800, 902, 1424, 1703 |
| BstNI | CCWGG | 1 cut(s) | 357 |
| BstNSI | RCATGY | 3 cut(s) | 455, 1097, 1326 |
| BstSCI | CCNGG | 2 cut(s) | 355, 1113 |
| BstSFI | CTRYAG | 2 cut(s) | 1250, 1609 |
| BstSLI | GKGCMC | 2 cut(s) | 87, 165 |
| BstUI | CGCG | 2 cut(s) | 168, 1627 |
| BstV1I | GCAGC | 7 cut(s) | 83, 913, 1209, 1264, 1676, 1709, 1742 |
| BstV2I | GAAGAC | 1 cut(s) | 1238 |
| BstX2I | RGATCY | 2 cut(s) | 825, 1315 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1294 |
| BstYI | RGATCY | 2 cut(s) | 825, 1315 |
| BsuRI | GGCC | 2 cut(s) | 224, 1178 |
| BtgI | CCRYGG | 1 cut(s) | 1532 |
| BtgZI | GCGATG | 1 cut(s) | 1653 |
| BtsCI | GGATG | 4 cut(s) | 1078, 1132, 1497, 1750 |
| BtsI | GCAGTG | 3 cut(s) | 635, 1083, 1713 |
| BtsIMutI | CAGTG | 5 cut(s) | 74, 635, 814, 1083, 1713 |
| BveI | ACCTGC | 1 cut(s) | 1658 |
| Cac8I | GCNNGC | 6 cut(s) | 116, 226, 262, 276, 537, 682 |
| CciI | TCATGA | 2 cut(s) | 756, 1036 |
| CfoI | GCGC | 5 cut(s) | 143, 170, 728, 1222, 1608 |
| Cfr10I | RCCGGY | 2 cut(s) | 274, 515 |
| Cfr13I | GGNCC | 1 cut(s) | 1177 |
| CseI | GACGC | 1 cut(s) | 220 |
| Csp6I | GTAC | 5 cut(s) | 58, 445, 779, 1084, 1537 |
| CviQI | GTAC | 5 cut(s) | 58, 445, 779, 1084, 1537 |
| DdeI | CTNAG | 7 cut(s) | 110, 236, 330, 685, 1380, 1473, 1759 |
| DinI | GGCGCC | 1 cut(s) | 142 |
| DpnI | GATC | 4 cut(s) | 827, 939, 1317, 1723 |
| DpnII | GATC | 4 cut(s) | 825, 937, 1315, 1721 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 752 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1492 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 752 |
| Eam1104I | CTCTTC | 5 cut(s) | 435, 567, 1104, 1111, 1476 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1492 |
| EarI | CTCTTC | 5 cut(s) | 435, 567, 1104, 1111, 1476 |
| EciI | GGCGGA | 1 cut(s) | 270 |
| Ecl136II | GAGCTC | 1 cut(s) | 1681 |
| Eco130I | CCWWGG | 2 cut(s) | 152, 369 |
| Eco24I | GRGCYC | 1 cut(s) | 1683 |
| Eco31I | GGTCTC | 2 cut(s) | 533, 872 |
| Eco47III | AGCGCT | 1 cut(s) | 1221 |
| Eco53kI | GAGCTC | 1 cut(s) | 1681 |
| Eco57I | CTGAAG | 3 cut(s) | 531, 1484, 1618 |
| EcoICRI | GAGCTC | 1 cut(s) | 1681 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1177 |
| EcoRII | CCWGG | 1 cut(s) | 355 |
| EcoT14I | CCWWGG | 2 cut(s) | 152, 369 |
| EcoT38I | GRGCYC | 1 cut(s) | 1683 |
| EgeI | GGCGCC | 1 cut(s) | 142 |
| EheI | GGCGCC | 1 cut(s) | 142 |
| ErhI | CCWWGG | 2 cut(s) | 152, 369 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 483, 515 |
| FaqI | GGGAC | 2 cut(s) | 1369, 1593 |
| FauNDI | CATATG | 2 cut(s) | 1436, 1713 |
| FbaI | TGATCA | 1 cut(s) | 937 |
| FblI | GTMKAC | 2 cut(s) | 122, 1622 |
| FokI | GGATG | 4 cut(s) | 1085, 1119, 1504, 1757 |
| FriOI | GRGCYC | 1 cut(s) | 1683 |
| FspBI | CTAG | 4 cut(s) | 153, 657, 1181, 1242 |
| GlaI | GCGC | 5 cut(s) | 142, 169, 727, 1221, 1607 |
| GsuI | CTGGAG | 1 cut(s) | 1316 |
| HaeII | RGCGCY | 3 cut(s) | 144, 729, 1223 |
| HaeIII | GGCC | 2 cut(s) | 224, 1178 |
| HapII | CCGG | 5 cut(s) | 46, 190, 275, 516, 1115 |
| HgaI | GACGC | 1 cut(s) | 220 |
| HhaI | GCGC | 5 cut(s) | 143, 170, 728, 1222, 1608 |
| Hin1I | GRCGYC | 2 cut(s) | 141, 231 |
| Hin6I | GCGC | 5 cut(s) | 141, 168, 726, 1220, 1606 |
| HinP1I | GCGC | 5 cut(s) | 141, 168, 726, 1220, 1606 |
| HincII | GTYRAC | 2 cut(s) | 123, 844 |
| HindII | GTYRAC | 2 cut(s) | 123, 844 |
| HindIII | AAGCTT | 4 cut(s) | 182, 399, 1343, 1466 |
| HpaII | CCGG | 5 cut(s) | 46, 190, 275, 516, 1115 |
| HphI | GGTGA | 3 cut(s) | 197, 1101, 1682 |
| Hpy166II | GTNNAC | 6 cut(s) | 60, 123, 163, 844, 1523, 1623 |
| Hpy8I | GTNNAC | 6 cut(s) | 60, 123, 163, 844, 1523, 1623 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 124 |
| HpyAV | CCTTC | 4 cut(s) | 421, 1306, 1511, 1771 |
| HpyCH4III | ACNGT | 4 cut(s) | 78, 710, 809, 1536 |
| HpyCH4IV | ACGT | 1 cut(s) | 1737 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 181, 237, 261, 725, 800, 902, 1424, 1703 |
| HpyF3I | CTNAG | 7 cut(s) | 110, 236, 330, 685, 1380, 1473, 1759 |
| HpySE526I | ACGT | 1 cut(s) | 1737 |
| Hsp92I | GRCGYC | 2 cut(s) | 141, 231 |
| HspAI | GCGC | 5 cut(s) | 141, 168, 726, 1220, 1606 |
| KasI | GGCGCC | 1 cut(s) | 140 |
| Kpn2I | TCCGGA | 1 cut(s) | 189 |
| KroI | GCCGGC | 1 cut(s) | 274 |
| KroNI | GCCGGC | 1 cut(s) | 276 |
| Ksp22I | TGATCA | 1 cut(s) | 937 |
| Kzo9I | GATC | 4 cut(s) | 825, 937, 1315, 1721 |
| LguI | GCTCTTC | 1 cut(s) | 1104 |
| LmnI | GCTCC | 6 cut(s) | 257, 319, 346, 618, 967, 1678 |
| Lsp1109I | GCAGC | 7 cut(s) | 83, 913, 1209, 1264, 1676, 1709, 1742 |
| MaeI | CTAG | 4 cut(s) | 153, 657, 1181, 1242 |
| MaeII | ACGT | 1 cut(s) | 1737 |
| MaeIII | GTNAC | 2 cut(s) | 710, 999 |
| MalI | GATC | 4 cut(s) | 827, 939, 1317, 1723 |
| MbiI | CCGCTC | 1 cut(s) | 322 |
| MboI | GATC | 4 cut(s) | 825, 937, 1315, 1721 |
| MfeI | CAATTG | 1 cut(s) | 596 |
| MflI | RGATCY | 2 cut(s) | 825, 1315 |
| MhlI | GDGCHC | 3 cut(s) | 87, 165, 1683 |
| Mly113I | GGCGCC | 1 cut(s) | 141 |
| MlyI | GAGTC | 5 cut(s) | 118, 893, 1001, 1031, 1391 |
| MmeI | TCCRAC | 2 cut(s) | 559, 969 |
| MreI | CGCCGGCG | 1 cut(s) | 274 |
| MroI | TCCGGA | 1 cut(s) | 189 |
| MroNI | GCCGGC | 1 cut(s) | 274 |
| MroXI | GAANNNNTTC | 2 cut(s) | 183, 1828 |
| MseI | TTAA | 7 cut(s) | 384, 705, 1056, 1170, 1235, 1307, 1685 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1362, 1413, 1716 |
| MspA1I | CMGCKG | 2 cut(s) | 228, 1147 |
| MspCI | CTTAAG | 1 cut(s) | 1306 |
| MspI | CCGG | 5 cut(s) | 46, 190, 275, 516, 1115 |
| MspR9I | CCNGG | 2 cut(s) | 357, 1115 |
| MunI | CAATTG | 1 cut(s) | 596 |
| MvaI | CCWGG | 1 cut(s) | 357 |
| MvnI | CGCG | 2 cut(s) | 168, 1627 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 181, 237, 261, 725, 800, 902, 1424, 1703 |
| NaeI | GCCGGC | 1 cut(s) | 276 |
| NarI | GGCGCC | 1 cut(s) | 141 |
| NciI | CCSGG | 1 cut(s) | 1115 |
| NdeI | CATATG | 2 cut(s) | 1436, 1713 |
| NdeII | GATC | 4 cut(s) | 825, 937, 1315, 1721 |
| NgoMIV | GCCGGC | 1 cut(s) | 274 |
| NlaIV | GGNNCC | 4 cut(s) | 86, 142, 259, 1317 |
| NmeAIII | GCCGAG | 2 cut(s) | 111, 228 |
| NspI | RCATGY | 3 cut(s) | 455, 1097, 1326 |
| NspV | TTCGAA | 4 cut(s) | 550, 565, 1810, 1822 |
| PagI | TCATGA | 2 cut(s) | 756, 1036 |
| PaqCI | CACCTGC | 1 cut(s) | 1658 |
| PciI | ACATGT | 1 cut(s) | 1322 |
| PciSI | GCTCTTC | 1 cut(s) | 1104 |
| PdiI | GCCGGC | 1 cut(s) | 276 |
| PdmI | GAANNNNTTC | 2 cut(s) | 183, 1828 |
| PfeI | GAWTC | 7 cut(s) | 8, 202, 496, 662, 740, 1262, 1331 |
| PleI | GAGTC | 5 cut(s) | 118, 893, 1000, 1030, 1390 |
| PluTI | GGCGCC | 1 cut(s) | 144 |
| PpsI | GAGTC | 5 cut(s) | 118, 893, 1000, 1030, 1390 |
| PscI | ACATGT | 1 cut(s) | 1322 |
| PsiI | TTATAA | 1 cut(s) | 1574 |
| Psp124BI | GAGCTC | 1 cut(s) | 1683 |
| Psp6I | CCWGG | 1 cut(s) | 355 |
| PspGI | CCWGG | 1 cut(s) | 355 |
| PspN4I | GGNNCC | 4 cut(s) | 86, 142, 259, 1317 |
| PspPI | GGNCC | 1 cut(s) | 1177 |
| PstI | CTGCAG | 1 cut(s) | 1254 |
| PsuI | RGATCY | 2 cut(s) | 825, 1315 |
| PvuII | CAGCTG | 1 cut(s) | 1147 |
| RsaI | GTAC | 5 cut(s) | 59, 446, 780, 1085, 1538 |
| RsaNI | GTAC | 5 cut(s) | 58, 445, 779, 1084, 1537 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1362, 1413, 1716 |
| SacI | GAGCTC | 1 cut(s) | 1683 |
| SalI | GTCGAC | 1 cut(s) | 121 |
| SapI | GCTCTTC | 1 cut(s) | 1104 |
| SaqAI | TTAA | 7 cut(s) | 384, 705, 1056, 1170, 1235, 1307, 1685 |
| Sau3AI | GATC | 4 cut(s) | 825, 937, 1315, 1721 |
| Sau96I | GGNCC | 1 cut(s) | 1177 |
| ScaI | AGTACT | 1 cut(s) | 1085 |
| SchI | GAGTC | 5 cut(s) | 118, 893, 1001, 1031, 1391 |
| ScrFI | CCNGG | 2 cut(s) | 357, 1115 |
| SduI | GDGCHC | 3 cut(s) | 87, 165, 1683 |
| SfcI | CTRYAG | 2 cut(s) | 1250, 1609 |
| SfoI | GGCGCC | 1 cut(s) | 142 |
| SfuI | TTCGAA | 4 cut(s) | 550, 565, 1810, 1822 |
| SgrAI | CRCCGGYG | 1 cut(s) | 274 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1362, 1413, 1716 |
| SmlI | CTYRAG | 2 cut(s) | 980, 1306 |
| SmoI | CTYRAG | 2 cut(s) | 980, 1306 |
| SspDI | GGCGCC | 1 cut(s) | 140 |
| SspI | AATATT | 3 cut(s) | 1051, 1196, 1569 |
| SspMI | CTAG | 4 cut(s) | 153, 657, 1181, 1242 |
| SstI | GAGCTC | 1 cut(s) | 1683 |
| StyD4I | CCNGG | 2 cut(s) | 355, 1113 |
| StyI | CCWWGG | 2 cut(s) | 152, 369 |
| TaaI | ACNGT | 4 cut(s) | 78, 710, 809, 1536 |
| TaiI | ACGT | 1 cut(s) | 1740 |
| TaqII | GACCGA | 1 cut(s) | 515 |
| TatI | WGTACW | 3 cut(s) | 57, 444, 1083 |
| TauI | GCSGC | 3 cut(s) | 231, 255, 1630 |
| TfiI | GAWTC | 7 cut(s) | 8, 202, 496, 662, 740, 1262, 1331 |
| Tru1I | TTAA | 7 cut(s) | 384, 705, 1056, 1170, 1235, 1307, 1685 |
| Tru9I | TTAA | 7 cut(s) | 384, 705, 1056, 1170, 1235, 1307, 1685 |
| TscAI | CASTG | 5 cut(s) | 81, 635, 814, 1083, 1713 |
| TseI | GCWGC | 7 cut(s) | 71, 926, 1222, 1252, 1664, 1697, 1755 |
| TspRI | CASTG | 5 cut(s) | 81, 635, 814, 1083, 1713 |
| Vha464I | CTTAAG | 1 cut(s) | 1306 |
| VneI | GTGCAC | 1 cut(s) | 161 |
| XapI | RAATTY | 8 cut(s) | 24, 858, 872, 886, 910, 1813, 1824, 1834 |
| XceI | RCATGY | 3 cut(s) | 455, 1097, 1326 |
| XmaJI | CCTAGG | 1 cut(s) | 152 |
| XmiI | GTMKAC | 2 cut(s) | 122, 1622 |
| XmnI | GAANNNNTTC | 2 cut(s) | 183, 1828 |
| XspI | CTAG | 4 cut(s) | 153, 657, 1181, 1242 |
| ZrmI | AGTACT | 1 cut(s) | 1085 |