Rh6BG265800

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000415
Physical Location & Seq
Reverse (-)
48119058 .. 48122044
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG265800.1

Sequence Viewer

Length: 882 bp
ATGACTAATTCCAATAGCTGCGGTGCCAATTTCAACAATCCAGGATGCAGAGACAGCATGAATATTTGTTACGTTCGCAAAAAACATTCTAACTCATTGGCTCATGATAAATTTTGGGACCAAAGATGCTGTTCTGGACATTACTTTGACGGAACTCTGAATTGTATCACTTGTCATAAATTTAAGCAAGCCGGGGAGATAGAATACTTGAACCTTGGTCGTGGTCTAATGACTTGTTCAAAATGCTGTTCTATTGCTATTAATAATTCAGAAGAATTCAAGCCAATTATTGAAAATGTGCATAATTTTTATGACAGTTTAAATCTGAAGGTTGATCGAGACATCCCTATTTTGTTGGTCGATGGTAATGAGATGTTCGGATCTAAACAAGAAGATTTAACTATGTTGCAAGATTTAGCAACATGTCTCTCGGGCAAATTGAGAATTTCAATTTTGTCTGGACTACCAGATATAGCCATGGGAGGAACTTTAGCACATGAGATGATGCATGCTTGGTTGAAACTTCAAGGTTGTAAGCCGTGGGAATGGGAAAGAAGAGTTGAAGAAGGGATCTGCCAAGTAATGAAGTACAAGTGGATGGAATGGTTTTGTTCTAGTAGTGATTTTGACTCTTGGTACAAAACCAATGAGCAAGCTCAATACGCAAGAAAGTTGAAAGAGTATCAAGTCCAAGTGATGGAGAGGTGGGTAGATAAAGTTTATGGCCAAGGGTTCAGAGATGCTATGAAGGCTGCAGAAATGTTTGGCTTCGAAACCACGCTGCACTACATCGTTGAAAAAGGAAAATTCCCTCGCAGTCAACCACCTCCTGTCCCGATTCCTAGGACACCTAGGGATGAAAGATGGAAGGGGGCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

293

Amino Acids

33.9

Weight (kDa)

7.04

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 149 - 265 6.4e-29 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 697
AciI CCGC 1 cut(s) 21
AclWI GGATC 2 cut(s) 388, 578
AcoI YGGCCR 1 cut(s) 724
AcsI RAATTY 5 cut(s) 110, 179, 275, 444, 806
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 2 cut(s) 590, 638
AfiI CCNNNNNNNGG 1 cut(s) 697
AflIII ACRYGT 1 cut(s) 422
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 18, 656
AluI AGCT 2 cut(s) 18, 656
Alw26I GTCTC 3 cut(s) 45, 333, 431
AlwI GGATC 2 cut(s) 388, 578
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 1 cut(s) 724
ApeKI GCWGC 3 cut(s) 18, 752, 781
ApoI RAATTY 5 cut(s) 110, 179, 275, 444, 806
AseI ATTAAT 1 cut(s) 261
AspA2I CCTAGG 2 cut(s) 842, 851
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 193
AsuII TTCGAA 1 cut(s) 771
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 1 cut(s) 118
AvrII CCTAGG 2 cut(s) 842, 851
BalI TGGCCA 1 cut(s) 726
BanI GGYRCC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 5, 739, 768
BccI CCATC 4 cut(s) 356, 592, 691, 858
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 1 cut(s) 42
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 3 cut(s) 45, 333, 431
BfaI CTAG 3 cut(s) 615, 843, 852
BfmI CTRYAG 1 cut(s) 753
BisI GCNGC 3 cut(s) 19, 753, 782
BlnI CCTAGG 2 cut(s) 842, 851
BlsI GCNGC 3 cut(s) 20, 754, 783
Bme1390I CCNGG 2 cut(s) 42, 193
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 25, 119
BmrFI CCNGG 2 cut(s) 42, 193
BmsI GCATC 4 cut(s) 35, 116, 495, 730
Bpu14I TTCGAA 1 cut(s) 771
BpuMI CCSGG 1 cut(s) 193
BsaJI CCNNGG 7 cut(s) 192, 214, 477, 539, 727, 842, 851
Bsc4I CCNNNNNNNGG 1 cut(s) 697
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 7 cut(s) 192, 214, 477, 539, 727, 842, 851
BseGI GGATG 4 cut(s) 50, 342, 603, 862
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMII CTCAG 1 cut(s) 867
BseXI GCAGC 3 cut(s) 5, 739, 768
BsgI GTGCAG 1 cut(s) 767
BshFI GGCC 1 cut(s) 726
BshNI GGYRCC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 131, 818
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 3 cut(s) 45, 333, 431
BsmFI GGGAC 2 cut(s) 131, 818
BsnI GGCC 1 cut(s) 726
BsoBI CYCGRG 1 cut(s) 430
Bsp119I TTCGAA 1 cut(s) 771
Bsp143I GATC 3 cut(s) 334, 380, 570
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 726
BspCNI CTCAG 1 cut(s) 868
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 25, 119
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 2 cut(s) 388, 578
BspT104I TTCGAA 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 23
BssECI CCNNGG 7 cut(s) 192, 214, 477, 539, 727, 842, 851
BssMI GATC 3 cut(s) 334, 380, 570
BssT1I CCWWGG 5 cut(s) 214, 477, 727, 842, 851
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 550
BstBI TTCGAA 1 cut(s) 771
BstC8I GCNNGC 3 cut(s) 189, 510, 654
BstDEI CTNAG 1 cut(s) 876
BstDSI CCRYGG 2 cut(s) 477, 539
BstF5I GGATG 4 cut(s) 50, 342, 603, 862
BstKTI GATC 3 cut(s) 337, 383, 573
BstMAI GTCTC 3 cut(s) 45, 333, 431
BstMBI GATC 3 cut(s) 334, 380, 570
BstMWI GCNNNNNNNGC 3 cut(s) 54, 662, 749
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 2 cut(s) 426, 512
BstSCI CCNGG 2 cut(s) 40, 191
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 3 cut(s) 5, 739, 768
BstX2I RGATCY 2 cut(s) 380, 570
BstYI RGATCY 2 cut(s) 380, 570
BsuRI GGCC 1 cut(s) 726
BtgI CCRYGG 2 cut(s) 477, 539
BtsCI GGATG 4 cut(s) 50, 342, 603, 862
Cac8I GCNNGC 3 cut(s) 189, 510, 654
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 589, 637
CviAII CATG 6 cut(s) 58, 104, 423, 478, 497, 509
CviQI GTAC 2 cut(s) 589, 637
DdeI CTNAG 1 cut(s) 876
DpnI GATC 3 cut(s) 336, 382, 572
DpnII GATC 3 cut(s) 334, 380, 570
DraI TTTAAA 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 550
Eco130I CCWWGG 5 cut(s) 214, 477, 727, 842, 851
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 5 cut(s) 214, 477, 727, 842, 851
EcoT22I ATGCAT 1 cut(s) 510
ErhI CCWWGG 5 cut(s) 214, 477, 727, 842, 851
FaeI CATG 6 cut(s) 61, 107, 426, 481, 500, 512
FaqI GGGAC 2 cut(s) 131, 818
FatI CATG 6 cut(s) 57, 103, 422, 477, 496, 508
Fnu4HI GCNGC 3 cut(s) 19, 753, 782
FokI GGATG 4 cut(s) 57, 329, 610, 869
Fsp4HI GCNGC 3 cut(s) 19, 753, 782
FspBI CTAG 3 cut(s) 615, 843, 852
GluI GCNGC 3 cut(s) 19, 753, 782
HaeIII GGCC 1 cut(s) 726
HapII CCGG 1 cut(s) 192
Hin1II CATG 6 cut(s) 61, 107, 426, 481, 500, 512
HincII GTYRAC 1 cut(s) 821
HindII GTYRAC 1 cut(s) 821
HinfI GANTC 2 cut(s) 629, 838
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 821
Hpy188I TCNGA 5 cut(s) 159, 271, 327, 380, 737
Hpy188III TCNNGA 5 cut(s) 104, 135, 338, 459, 835
Hpy8I GTNNAC 1 cut(s) 821
HpyAV CCTTC 4 cut(s) 322, 560, 742, 862
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 6 cut(s) 48, 301, 409, 508, 755, 784
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 662, 749
HpyF3I CTNAG 1 cut(s) 876
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 6 cut(s) 61, 107, 426, 481, 500, 512
Kzo9I GATC 3 cut(s) 334, 380, 570
LpnPI CCDG 7 cut(s) 27, 54, 120, 205, 444, 480, 843
Lsp1109I GCAGC 3 cut(s) 5, 739, 768
LweI GCATC 4 cut(s) 35, 116, 495, 730
MaeI CTAG 3 cut(s) 615, 843, 852
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 68
MalI GATC 3 cut(s) 336, 382, 572
MboI GATC 3 cut(s) 334, 380, 570
MboII GAAGA 4 cut(s) 284, 404, 567, 575
MflI RGATCY 2 cut(s) 380, 570
MlsI TGGCCA 1 cut(s) 726
MluNI TGGCCA 1 cut(s) 726
MlyI GAGTC 1 cut(s) 623
MnlI CCTC 4 cut(s) 476, 696, 822, 837
Mox20I TGGCCA 1 cut(s) 726
Mph1103I ATGCAT 1 cut(s) 510
MscI TGGCCA 1 cut(s) 726
MseI TTAA 4 cut(s) 183, 261, 320, 398
Msp20I TGGCCA 1 cut(s) 726
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 42, 193
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 54, 662, 749
NciI CCSGG 1 cut(s) 193
NcoI CCATGG 1 cut(s) 477
NdeII GATC 3 cut(s) 334, 380, 570
NlaIII CATG 6 cut(s) 61, 107, 426, 481, 500, 512
NlaIV GGNNCC 2 cut(s) 25, 119
NsiI ATGCAT 1 cut(s) 510
NspI RCATGY 2 cut(s) 426, 512
NspV TTCGAA 1 cut(s) 771
PaeI GCATGC 1 cut(s) 512
PagI TCATGA 1 cut(s) 103
PciI ACATGT 1 cut(s) 422
PfeI GAWTC 1 cut(s) 838
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 3 cut(s) 20, 754, 783
PleI GAGTC 1 cut(s) 623
PpsI GAGTC 1 cut(s) 623
PscI ACATGT 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 25, 119
PspPI GGNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 757
PsuI RGATCY 2 cut(s) 380, 570
RsaI GTAC 2 cut(s) 590, 638
RsaNI GTAC 2 cut(s) 589, 637
SaqAI TTAA 4 cut(s) 183, 261, 320, 398
SatI GCNGC 3 cut(s) 19, 753, 782
Sau3AI GATC 3 cut(s) 334, 380, 570
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 2 cut(s) 42, 193
SetI ASST 9 cut(s) 20, 75, 216, 333, 532, 658, 707, 829, 853
SfaNI GCATC 4 cut(s) 35, 116, 495, 730
SfcI CTRYAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 771
SinI GGWCC 1 cut(s) 118
SphI GCATGC 1 cut(s) 512
SsiI CCGC 1 cut(s) 21
SspI AATATT 1 cut(s) 64
SspMI CTAG 3 cut(s) 615, 843, 852
StyD4I CCNGG 2 cut(s) 40, 191
StyI CCWWGG 5 cut(s) 214, 477, 727, 842, 851
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 337, 360, 771
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 1 cut(s) 838
Tru1I TTAA 4 cut(s) 183, 261, 320, 398
Tru9I TTAA 4 cut(s) 183, 261, 320, 398
TseI GCWGC 3 cut(s) 18, 752, 781
TspDTI ATGAA 4 cut(s) 74, 599, 761, 873
TspGWI ACGGA 1 cut(s) 165
Van91I CCANNNNNTGG 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 118
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 5 cut(s) 110, 179, 275, 444, 806
XceI RCATGY 2 cut(s) 426, 512
XmaJI CCTAGG 2 cut(s) 842, 851
XspI CTAG 3 cut(s) 615, 843, 852
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.