DNA polymerase III
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DA1-like | PF12315 | 164 - 281 | 2e-19 | Protein DA1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1016 |
| Acc36I | ACCTGC | 1 cut(s) | 690 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 339 |
| AccI | GTMKAC | 2 cut(s) | 362, 583 |
| AccII | CGCG | 2 cut(s) | 492, 1225 |
| AciI | CCGC | 6 cut(s) | 891, 909, 1034, 1059, 1062, 1225 |
| AcoI | YGGCCR | 3 cut(s) | 62, 772, 1209 |
| AcsI | RAATTY | 6 cut(s) | 178, 218, 255, 393, 420, 852 |
| AcyI | GRCGYC | 1 cut(s) | 1139 |
| AdeI | CACNNNGTG | 1 cut(s) | 1115 |
| AfaI | GTAC | 3 cut(s) | 501, 880, 1054 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 339, 578, 668, 1224 |
| AflII | CTTAAG | 1 cut(s) | 239 |
| AgsI | TTSAA | 7 cut(s) | 218, 284, 578, 707, 740, 806, 1268 |
| AhlI | ACTAGT | 1 cut(s) | 733 |
| AluBI | AGCT | 4 cut(s) | 42, 721, 800, 974 |
| AluI | AGCT | 4 cut(s) | 42, 721, 800, 974 |
| Alw26I | GTCTC | 1 cut(s) | 1239 |
| AoxI | GGCC | 3 cut(s) | 62, 772, 1209 |
| ApoI | RAATTY | 6 cut(s) | 178, 218, 255, 393, 420, 852 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 255 |
| AspLEI | GCGC | 1 cut(s) | 494 |
| AspS9I | GGNCC | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 3 cut(s) | 507, 880, 892 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| BalI | TGGCCA | 1 cut(s) | 774 |
| BbsI | GAAGAC | 1 cut(s) | 1211 |
| BccI | CCATC | 4 cut(s) | 92, 122, 588, 1039 |
| BceAI | ACGGC | 1 cut(s) | 1224 |
| BciVI | GTATCC | 1 cut(s) | 926 |
| BclI | TGATCA | 1 cut(s) | 1117 |
| BcoDI | GTCTC | 1 cut(s) | 1239 |
| BcuI | ACTAGT | 1 cut(s) | 733 |
| BfaI | CTAG | 6 cut(s) | 300, 485, 734, 792, 830, 1004 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfrI | CTTAAG | 1 cut(s) | 239 |
| BfuAI | ACCTGC | 1 cut(s) | 690 |
| BfuI | GTATCC | 1 cut(s) | 926 |
| BisI | GCNGC | 1 cut(s) | 1062 |
| BlsI | GCNGC | 1 cut(s) | 1063 |
| BmcAI | AGTACT | 1 cut(s) | 880 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 1 cut(s) | 118 |
| BmrI | ACTGGG | 1 cut(s) | 327 |
| BmsI | GCATC | 3 cut(s) | 402, 546, 778 |
| BmuI | ACTGGG | 1 cut(s) | 327 |
| BpiI | GAAGAC | 1 cut(s) | 1211 |
| BsaHI | GRCGYC | 1 cut(s) | 1139 |
| BsaI | GGTCTC | 1 cut(s) | 1239 |
| BsaJI | CCNNGG | 4 cut(s) | 121, 426, 775, 1173 |
| BsaWI | WCCGGW | 2 cut(s) | 665, 921 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 339, 578, 668, 1224 |
| Bse1I | ACTGG | 4 cut(s) | 333, 377, 876, 1143 |
| BseDI | CCNNGG | 4 cut(s) | 121, 426, 775, 1173 |
| BseGI | GGATG | 4 cut(s) | 116, 253, 599, 1055 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 339, 578, 668, 1224 |
| BseMII | CTCAG | 3 cut(s) | 12, 159, 1068 |
| BseNI | ACTGG | 4 cut(s) | 333, 377, 876, 1143 |
| BseRI | GAGGAG | 3 cut(s) | 304, 460, 468 |
| BsgI | GTGCAG | 1 cut(s) | 668 |
| Bsh1236I | CGCG | 2 cut(s) | 492, 1225 |
| BshFI | GGCC | 3 cut(s) | 64, 774, 1211 |
| BsiSI | CCGG | 3 cut(s) | 61, 666, 922 |
| BslFI | GGGAC | 2 cut(s) | 550, 994 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 339, 578, 668, 1224 |
| BsmAI | GTCTC | 1 cut(s) | 1239 |
| BsmFI | GGGAC | 2 cut(s) | 550, 994 |
| BsnI | GGCC | 3 cut(s) | 64, 774, 1211 |
| Bso31I | GGTCTC | 1 cut(s) | 1239 |
| Bsp143I | GATC | 5 cut(s) | 86, 165, 694, 1006, 1117 |
| Bsp19I | CCATGG | 1 cut(s) | 426 |
| BspACI | CCGC | 6 cut(s) | 891, 909, 1034, 1059, 1062, 1225 |
| BspANI | GGCC | 3 cut(s) | 64, 774, 1211 |
| BspCNI | CTCAG | 3 cut(s) | 13, 158, 1069 |
| BspFNI | CGCG | 2 cut(s) | 492, 1225 |
| BspMI | ACCTGC | 1 cut(s) | 690 |
| BspQI | GCTCTTC | 1 cut(s) | 160 |
| BspTI | CTTAAG | 1 cut(s) | 239 |
| BspTNI | GGTCTC | 1 cut(s) | 1239 |
| BsrI | ACTGG | 4 cut(s) | 333, 377, 876, 1143 |
| BssECI | CCNNGG | 4 cut(s) | 121, 426, 775, 1173 |
| BssMI | GATC | 5 cut(s) | 86, 165, 694, 1006, 1117 |
| BssNAI | GTATAC | 1 cut(s) | 584 |
| BssNI | GRCGYC | 1 cut(s) | 1139 |
| BssT1I | CCWWGG | 3 cut(s) | 121, 426, 775 |
| Bst1107I | GTATAC | 1 cut(s) | 584 |
| Bst4CI | ACNGT | 1 cut(s) | 1177 |
| Bst6I | CTCTTC | 1 cut(s) | 160 |
| BstACI | GRCGYC | 1 cut(s) | 1139 |
| BstAFI | CTTAAG | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 3 cut(s) | 21, 145, 1077 |
| BstDSI | CCRYGG | 2 cut(s) | 426, 1173 |
| BstEII | GGTNACC | 1 cut(s) | 513 |
| BstF5I | GGATG | 4 cut(s) | 116, 253, 599, 1055 |
| BstFNI | CGCG | 2 cut(s) | 492, 1225 |
| BstHHI | GCGC | 1 cut(s) | 494 |
| BstKTI | GATC | 5 cut(s) | 89, 168, 697, 1009, 1120 |
| BstMAI | GTCTC | 1 cut(s) | 1239 |
| BstMBI | GATC | 5 cut(s) | 86, 165, 694, 1006, 1117 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 150, 797, 806 |
| BstNSI | RCATGY | 2 cut(s) | 325, 563 |
| BstPI | GGTNACC | 1 cut(s) | 513 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstUI | CGCG | 2 cut(s) | 492, 1225 |
| BstV2I | GAAGAC | 1 cut(s) | 1211 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 594 |
| BstZ17I | GTATAC | 1 cut(s) | 584 |
| BsuI | GTATCC | 1 cut(s) | 926 |
| BsuRI | GGCC | 3 cut(s) | 64, 774, 1211 |
| BtgI | CCRYGG | 2 cut(s) | 426, 1173 |
| BtsCI | GGATG | 4 cut(s) | 116, 253, 599, 1055 |
| BtsI | GCAGTG | 2 cut(s) | 659, 1071 |
| BtsIMutI | CAGTG | 3 cut(s) | 659, 1071, 1105 |
| BveI | ACCTGC | 1 cut(s) | 690 |
| Cac8I | GCNNGC | 1 cut(s) | 561 |
| CfoI | GCGC | 1 cut(s) | 494 |
| Cfr13I | GGNCC | 1 cut(s) | 118 |
| CseI | GACGC | 3 cut(s) | 498, 552, 1128 |
| Csp6I | GTAC | 3 cut(s) | 500, 879, 1053 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1171, 1206 |
| CviAII | CATG | 7 cut(s) | 35, 271, 322, 427, 548, 560, 1010 |
| CviQI | GTAC | 3 cut(s) | 500, 879, 1053 |
| DdeI | CTNAG | 3 cut(s) | 21, 145, 1077 |
| DpnI | GATC | 5 cut(s) | 88, 167, 696, 1008, 1119 |
| DpnII | GATC | 5 cut(s) | 86, 165, 694, 1006, 1117 |
| DraIII | CACNNNGTG | 1 cut(s) | 1115 |
| EaeI | YGGCCR | 3 cut(s) | 62, 772, 1209 |
| Eam1104I | CTCTTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 1 cut(s) | 160 |
| EciI | GGCGGA | 1 cut(s) | 1048 |
| Eco130I | CCWWGG | 3 cut(s) | 121, 426, 775 |
| Eco31I | GGTCTC | 1 cut(s) | 1239 |
| Eco32I | GATATC | 1 cut(s) | 460 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| Eco91I | GGTNACC | 1 cut(s) | 513 |
| EcoO65I | GGTNACC | 1 cut(s) | 513 |
| EcoRI | GAATTC | 4 cut(s) | 178, 218, 420, 852 |
| EcoRV | GATATC | 1 cut(s) | 460 |
| EcoT14I | CCWWGG | 3 cut(s) | 121, 426, 775 |
| EcoT22I | ATGCAT | 2 cut(s) | 417, 561 |
| ErhI | CCWWGG | 3 cut(s) | 121, 426, 775 |
| FaeI | CATG | 7 cut(s) | 38, 274, 325, 430, 551, 563, 1013 |
| FaqI | GGGAC | 2 cut(s) | 550, 994 |
| FatI | CATG | 7 cut(s) | 34, 270, 321, 426, 547, 559, 1009 |
| FauNDI | CATATG | 2 cut(s) | 589, 1199 |
| FbaI | TGATCA | 1 cut(s) | 1117 |
| FblI | GTMKAC | 2 cut(s) | 362, 583 |
| Fnu4HI | GCNGC | 1 cut(s) | 1062 |
| FokI | GGATG | 4 cut(s) | 123, 260, 606, 1042 |
| Fsp4HI | GCNGC | 1 cut(s) | 1062 |
| FspBI | CTAG | 6 cut(s) | 300, 485, 734, 792, 830, 1004 |
| GlaI | GCGC | 1 cut(s) | 493 |
| GluI | GCNGC | 1 cut(s) | 1062 |
| HaeIII | GGCC | 3 cut(s) | 64, 774, 1211 |
| HapII | CCGG | 3 cut(s) | 61, 666, 922 |
| HgaI | GACGC | 3 cut(s) | 498, 552, 1128 |
| HhaI | GCGC | 1 cut(s) | 494 |
| Hin1I | GRCGYC | 1 cut(s) | 1139 |
| Hin1II | CATG | 7 cut(s) | 38, 274, 325, 430, 551, 563, 1013 |
| Hin6I | GCGC | 1 cut(s) | 492 |
| HinP1I | GCGC | 1 cut(s) | 492 |
| HincII | GTYRAC | 1 cut(s) | 363 |
| HindII | GTYRAC | 1 cut(s) | 363 |
| HinfI | GANTC | 3 cut(s) | 17, 294, 780 |
| HpaII | CCGG | 3 cut(s) | 61, 666, 922 |
| HphI | GGTGA | 3 cut(s) | 507, 880, 892 |
| Hpy166II | GTNNAC | 2 cut(s) | 363, 584 |
| Hpy188I | TCNGA | 4 cut(s) | 22, 148, 184, 950 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 300, 641 |
| Hpy8I | GTNNAC | 2 cut(s) | 363, 584 |
| Hpy99I | CGWCG | 1 cut(s) | 364 |
| HpyAV | CCTTC | 4 cut(s) | 338, 584, 611, 672 |
| HpyCH4III | ACNGT | 1 cut(s) | 1177 |
| HpyCH4IV | ACGT | 1 cut(s) | 1114 |
| HpyCH4V | TGCA | 7 cut(s) | 192, 371, 415, 559, 652, 685, 1134 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 150, 797, 806 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 145, 1077 |
| HpySE526I | ACGT | 1 cut(s) | 1114 |
| Hsp92I | GRCGYC | 1 cut(s) | 1139 |
| Hsp92II | CATG | 7 cut(s) | 38, 274, 325, 430, 551, 563, 1013 |
| HspAI | GCGC | 1 cut(s) | 492 |
| Ksp22I | TGATCA | 1 cut(s) | 1117 |
| Kzo9I | GATC | 5 cut(s) | 86, 165, 694, 1006, 1117 |
| LguI | GCTCTTC | 1 cut(s) | 160 |
| LmnI | GCTCC | 1 cut(s) | 797 |
| LweI | GCATC | 3 cut(s) | 402, 546, 778 |
| MaeI | CTAG | 6 cut(s) | 300, 485, 734, 792, 830, 1004 |
| MaeII | ACGT | 1 cut(s) | 1114 |
| MaeIII | GTNAC | 3 cut(s) | 3, 513, 729 |
| MalI | GATC | 5 cut(s) | 88, 167, 696, 1008, 1119 |
| MboI | GATC | 5 cut(s) | 86, 165, 694, 1006, 1117 |
| MboII | GAAGA | 5 cut(s) | 107, 147, 546, 626, 1216 |
| MfeI | CAATTG | 3 cut(s) | 810, 984, 1188 |
| MlsI | TGGCCA | 1 cut(s) | 774 |
| MluNI | TGGCCA | 1 cut(s) | 774 |
| MlyI | GAGTC | 1 cut(s) | 11 |
| MmeI | TCCRAC | 1 cut(s) | 973 |
| MnlI | CCTC | 8 cut(s) | 16, 282, 438, 446, 578, 595, 931, 1259 |
| Mox20I | TGGCCA | 1 cut(s) | 774 |
| Mph1103I | ATGCAT | 2 cut(s) | 417, 561 |
| MroXI | GAANNNNTTC | 1 cut(s) | 255 |
| MscI | TGGCCA | 1 cut(s) | 774 |
| MseI | TTAA | 7 cut(s) | 240, 350, 381, 914, 942, 999, 1082 |
| MslI | CAYNNNNRTG | 1 cut(s) | 592 |
| Msp20I | TGGCCA | 1 cut(s) | 774 |
| MspCI | CTTAAG | 1 cut(s) | 239 |
| MspI | CCGG | 3 cut(s) | 61, 666, 922 |
| MunI | CAATTG | 3 cut(s) | 810, 984, 1188 |
| MvnI | CGCG | 2 cut(s) | 492, 1225 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 150, 797, 806 |
| NcoI | CCATGG | 1 cut(s) | 426 |
| NdeI | CATATG | 2 cut(s) | 589, 1199 |
| NdeII | GATC | 5 cut(s) | 86, 165, 694, 1006, 1117 |
| NlaIII | CATG | 7 cut(s) | 38, 274, 325, 430, 551, 563, 1013 |
| NmuCI | GTSAC | 2 cut(s) | 3, 513 |
| NsiI | ATGCAT | 2 cut(s) | 417, 561 |
| NspI | RCATGY | 2 cut(s) | 325, 563 |
| PaeI | GCATGC | 1 cut(s) | 563 |
| PciSI | GCTCTTC | 1 cut(s) | 160 |
| PdmI | GAANNNNTTC | 1 cut(s) | 255 |
| PfeI | GAWTC | 2 cut(s) | 294, 780 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 339 |
| PkrI | GCNGC | 1 cut(s) | 1063 |
| PleI | GAGTC | 1 cut(s) | 11 |
| PpsI | GAGTC | 1 cut(s) | 11 |
| PsiI | TTATAA | 1 cut(s) | 1016 |
| PspEI | GGTNACC | 1 cut(s) | 513 |
| PspPI | GGNCC | 1 cut(s) | 118 |
| RsaI | GTAC | 3 cut(s) | 501, 880, 1054 |
| RsaNI | GTAC | 3 cut(s) | 500, 879, 1053 |
| RseI | CAYNNNNRTG | 1 cut(s) | 592 |
| SalI | GTCGAC | 1 cut(s) | 361 |
| SapI | GCTCTTC | 1 cut(s) | 160 |
| SaqAI | TTAA | 7 cut(s) | 240, 350, 381, 914, 942, 999, 1082 |
| SatI | GCNGC | 1 cut(s) | 1062 |
| Sau3AI | GATC | 5 cut(s) | 86, 165, 694, 1006, 1117 |
| Sau96I | GGNCC | 1 cut(s) | 118 |
| ScaI | AGTACT | 1 cut(s) | 880 |
| SchI | GAGTC | 1 cut(s) | 11 |
| SfaNI | GCATC | 3 cut(s) | 402, 546, 778 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SinI | GGWCC | 1 cut(s) | 118 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 592 |
| SmlI | CTYRAG | 1 cut(s) | 239 |
| SmoI | CTYRAG | 1 cut(s) | 239 |
| SpeI | ACTAGT | 1 cut(s) | 733 |
| SphI | GCATGC | 1 cut(s) | 563 |
| SsiI | CCGC | 6 cut(s) | 891, 909, 1034, 1059, 1062, 1225 |
| SspI | AATATT | 1 cut(s) | 440 |
| SspMI | CTAG | 6 cut(s) | 300, 485, 734, 792, 830, 1004 |
| StyI | CCWWGG | 3 cut(s) | 121, 426, 775 |
| TaaI | ACNGT | 1 cut(s) | 1177 |
| TaiI | ACGT | 1 cut(s) | 1117 |
| TaqI | TCGA | 2 cut(s) | 362, 399 |
| TatI | WGTACW | 2 cut(s) | 878, 1052 |
| TauI | GCSGC | 1 cut(s) | 1064 |
| TfiI | GAWTC | 2 cut(s) | 294, 780 |
| Tru1I | TTAA | 7 cut(s) | 240, 350, 381, 914, 942, 999, 1082 |
| Tru9I | TTAA | 7 cut(s) | 240, 350, 381, 914, 942, 999, 1082 |
| TscAI | CASTG | 3 cut(s) | 659, 1078, 1105 |
| TseFI | GTSAC | 2 cut(s) | 3, 513 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 513 |
| TspDTI | ATGAA | 6 cut(s) | 259, 264, 772, 946, 1186, 1253 |
| TspRI | CASTG | 3 cut(s) | 659, 1078, 1105 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 339 |
| Vha464I | CTTAAG | 1 cut(s) | 239 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| XapI | RAATTY | 6 cut(s) | 178, 218, 255, 393, 420, 852 |
| XbaI | TCTAGA | 1 cut(s) | 299 |
| XceI | RCATGY | 2 cut(s) | 325, 563 |
| XmiI | GTMKAC | 2 cut(s) | 362, 583 |
| XmnI | GAANNNNTTC | 1 cut(s) | 255 |
| XspI | CTAG | 6 cut(s) | 300, 485, 734, 792, 830, 1004 |
| ZrmI | AGTACT | 1 cut(s) | 880 |
| Zsp2I | ATGCAT | 2 cut(s) | 417, 561 |