RchiOBHm_Chr6g0285661

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000415
Physical Location & Seq
Reverse (-)
48985048 .. 48985610
563 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25624

Sequence Viewer

Length: 372 bp
ATGGCTACTCAGTGTGGTGTCTGCAATGTAAATTCTAATAAATTGAGCTACTATAAATTTTGGGAGGAATCTGTGTGTCGTGAACATGCCTCTGATGGGACTCTCAGGTGTTATACCTGTCACAGATTTAAGAAAGCTCAGGATCCAGAATATTTGGACCTTAATGATAATGGCAGAAAACTTTGCTCATATTGTTCTAGCATTGCTACCTTGGATCCAAAGGAATGCATGCCCCTTATTCAAAATGTGCGTGAATTTTATAAAAGTTTAAACCTCGTGGTGGATGAAACCATTCCTTTTTTGTTGGTCGACAAGGATATGATGTTCAAATTCATACCAGGTATATTATTATATATGATTCGTTTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

123

Amino Acids

14.34

Weight (kDa)

6.7

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccI GTMKAC 1 cut(s) 309
AclWI GGATC 4 cut(s) 137, 150, 209, 222
AcsI RAATTY 4 cut(s) 31, 56, 254, 329
AfiI CCNNNNNNNGG 2 cut(s) 96, 280
AgsI TTSAA 2 cut(s) 242, 328
AjnI CCWGG 1 cut(s) 337
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 2 cut(s) 48, 137
AluI AGCT 2 cut(s) 48, 137
AlwI GGATC 4 cut(s) 137, 150, 209, 222
ApoI RAATTY 4 cut(s) 31, 56, 254, 329
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 157
BamHI GGATCC 2 cut(s) 142, 214
BauI CACGAG 1 cut(s) 275
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 339
BfaI CTAG 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 144, 216
BmrFI CCNGG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 280
Bse3DI GCAATG 2 cut(s) 31, 201
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 96, 280
BseMI GCAATG 2 cut(s) 31, 201
BseMII CTCAG 3 cut(s) 23, 118, 152
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 96, 280
BsmFI GGGAC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 230
Bsp143I GATC 2 cut(s) 142, 214
BspCNI CTCAG 3 cut(s) 22, 117, 151
BspLI GGNNCC 2 cut(s) 144, 216
BspPI GGATC 4 cut(s) 137, 150, 209, 222
BsrDI GCAATG 2 cut(s) 31, 201
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 142, 214
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 3 cut(s) 9, 104, 138
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 2 cut(s) 145, 217
BstMBI GATC 2 cut(s) 142, 214
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 2 cut(s) 89, 232
BstSCI CCNGG 1 cut(s) 337
BstX2I RGATCY 2 cut(s) 142, 214
BstYI RGATCY 2 cut(s) 142, 214
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 157
CsiI ACCWGGT 1 cut(s) 337
CviAII CATG 2 cut(s) 86, 229
CviJI RGCY 3 cut(s) 5, 48, 137
CviKI_1 RGCY 3 cut(s) 5, 48, 137
DdeI CTNAG 3 cut(s) 9, 104, 138
DpnI GATC 2 cut(s) 144, 216
DpnII GATC 2 cut(s) 142, 214
DraI TTTAAA 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 89, 232
FaqI GGGAC 1 cut(s) 112
FatI CATG 2 cut(s) 85, 228
FblI GTMKAC 1 cut(s) 309
FokI GGATG 1 cut(s) 296
FspBI CTAG 1 cut(s) 198
Hin1II CATG 2 cut(s) 89, 232
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 68, 100, 358
Hpy166II GTNNAC 2 cut(s) 83, 310
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 80, 140, 146
Hpy8I GTNNAC 2 cut(s) 83, 310
HpyCH4V TGCA 2 cut(s) 24, 228
HpyF3I CTNAG 3 cut(s) 9, 104, 138
Hsp92II CATG 2 cut(s) 89, 232
Kzo9I GATC 2 cut(s) 142, 214
LpnPI CCDG 6 cut(s) 91, 125, 130, 159, 324, 351
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 144, 216
MboI GATC 2 cut(s) 142, 214
MflI RGATCY 2 cut(s) 142, 214
MluCI AATT 5 cut(s) 31, 41, 56, 254, 329
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 3 cut(s) 58, 100, 284
Mph1103I ATGCAT 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 3 cut(s) 129, 162, 269
MspR9I CCNGG 1 cut(s) 339
MssI GTTTAAAC 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 1 cut(s) 339
NdeII GATC 2 cut(s) 142, 214
NlaIII CATG 2 cut(s) 89, 232
NlaIV GGNNCC 2 cut(s) 144, 216
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 2 cut(s) 89, 232
PaeI GCATGC 1 cut(s) 232
PctI GAATGC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 68, 358
PleI GAGTC 1 cut(s) 94
PmeI GTTTAAAC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 94
PsiI TTATAA 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 144, 216
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 2 cut(s) 142, 214
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 3 cut(s) 129, 162, 269
Sau3AI GATC 2 cut(s) 142, 214
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 339
SetI ASST 8 cut(s) 50, 110, 119, 139, 162, 212, 276, 343
SexAI ACCWGGT 1 cut(s) 337
SinI GGWCC 1 cut(s) 157
SphI GCATGC 1 cut(s) 232
Sse9I AATT 5 cut(s) 31, 41, 56, 254, 329
SspI AATATT 1 cut(s) 152
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 210
TaqI TCGA 1 cut(s) 309
TasI AATT 5 cut(s) 31, 41, 56, 254, 329
TfiI GAWTC 2 cut(s) 68, 358
Tru1I TTAA 3 cut(s) 129, 162, 269
Tru9I TTAA 3 cut(s) 129, 162, 269
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 300, 322
TspRI CASTG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 4 cut(s) 31, 56, 254, 329
XceI RCATGY 2 cut(s) 89, 232
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.