Rh7AG119900

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000415
Physical Location & Seq
Reverse (-)
9393441 .. 9395375
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG119900.1

Sequence Viewer

Length: 888 bp
ATGAGCAGAATATATCAAGATGGTGCGGCTGGTATGTTCATTCCAAGTATATCGGCTCTCTTTACAATGCCATCGGTACCGGTTAAAATAATGGTTATTTTAGCCAGATTTATTATGTGCAGAATTCAAACGATTGCAAAATATTCCAGAAGTGGAGGTGATATTAAAAAGGTTGTGAAGCTCTCGCTGGGAGACGCAATTCTACTTTTGTTTGGAAAACCAGATGTAGAAATGGGAGCAATCTTGGCACATGAGATGATGCATGCATGGTTCCGCCGTCAAGGTATGCCATGGGGATGTGAAAGAAGCACTGAAGAAGGTATTTGCCAAGTAATGTCTTACAAATGGTTGCAGTGGTTTTCTTCCAGTGGTCTTGATACCTCGCACAAAACCCATCAGCAAGTTCAATATACAAGAAAGCTGAAAGAGTTCTTAGTAGAAGAAATTCGGTCTCGAGGAGACGAAGTTTATGTCCAAGGATTCAGAGATGCTATGCACGCTATTGAAACATTTGGCTTTAAGACCACACTAGCCCATGCCGTTAAAAATGGAACTCTACCACTAGCTATGATGGATATTACACGCTCCAACGCCGCAGCCGCCACCACCAAGTTGATAAGAAAGAAAACCAGTGCTACCCCAATAACTCAGTTATTATGGAAGGCGACCAGCAATACAACCAAATCATTATGGAAGGCCACAGCTGCCGCAATAACTGACTTATTATGGAAGGCGGCCACCACCTACGAAACGCCGCGGTTTATTATTATGAAAGGTCACTGCCACAACCAATATCATCAAGGGCAAAGCCATAAAAACTTACAAGAAGGCATGTCCTTGTCCCCTATGCTCCTTGTATTTATTGGTATACTAATTGAACACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

295

Amino Acids

33.26

Weight (kDa)

9.72

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 65 - 180 4.7e-30 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 868
AccII CGCG 1 cut(s) 757
AciI CCGC 8 cut(s) 26, 274, 594, 600, 708, 734, 755, 757
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 2 cut(s) 123, 444
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 1 cut(s) 78
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 4 cut(s) 128, 407, 506, 878
AluBI AGCT 4 cut(s) 181, 421, 566, 704
AluI AGCT 4 cut(s) 181, 421, 566, 704
Alw26I GTCTC 3 cut(s) 186, 453, 456
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 2 cut(s) 696, 735
ApeKI GCWGC 2 cut(s) 596, 704
ApoI RAATTY 2 cut(s) 123, 444
ArsI GACNNNNNNTTYG 2 cut(s) 456, 488
AsiGI ACCGGT 1 cut(s) 79
Asp700I GAANNNNTTC 2 cut(s) 428, 444
Asp718I GGTACC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 453
BanI GGYRCC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 608, 691
BccI CCATC 4 cut(s) 14, 79, 402, 565
BceAI ACGGC 2 cut(s) 261, 524
BcoDI GTCTC 3 cut(s) 186, 453, 456
BfaI CTAG 2 cut(s) 530, 563
BisI GCNGC 8 cut(s) 27, 594, 597, 600, 705, 708, 735, 755
BlsI GCNGC 8 cut(s) 28, 595, 598, 601, 706, 709, 736, 756
BmeT110I CYCGRG 1 cut(s) 453
BmiI GGNNCC 2 cut(s) 78, 272
BmsI GCATC 2 cut(s) 249, 478
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 290, 475, 755
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 366, 630
BseDI CCNNGG 3 cut(s) 290, 475, 755
BseGI GGATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 2 cut(s) 366, 630
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 2 cut(s) 608, 691
BseYI CCCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 757
BshFI GGCC 2 cut(s) 698, 737
BshNI GGYRCC 1 cut(s) 76
BshTI ACCGGT 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 826
BsmAI GTCTC 3 cut(s) 186, 453, 456
BsmBI CGTCTC 2 cut(s) 186, 453
BsmFI GGGAC 1 cut(s) 826
BsnI GGCC 2 cut(s) 698, 737
Bso31I GGTCTC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 453
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 8 cut(s) 26, 274, 594, 600, 708, 734, 755, 757
BspANI GGCC 2 cut(s) 698, 737
BspCNI CTCAG 1 cut(s) 661
BspFNI CGCG 1 cut(s) 757
BspLI GGNNCC 2 cut(s) 78, 272
BspT107I GGYRCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 2 cut(s) 366, 630
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 290, 475, 755
BssNAI GTATAC 1 cut(s) 869
BssT1I CCWWGG 2 cut(s) 290, 475
Bst1107I GTATAC 1 cut(s) 869
BstC8I GCNNGC 2 cut(s) 264, 498
BstDEI CTNAG 2 cut(s) 433, 648
BstDSI CCRYGG 2 cut(s) 290, 755
BstF5I GGATG 1 cut(s) 302
BstFNI CGCG 1 cut(s) 757
BstMAI GTCTC 3 cut(s) 186, 453, 456
BstMWI GCNNNNNNNGC 4 cut(s) 245, 497, 599, 704
BstNSI RCATGY 2 cut(s) 266, 835
BstUI CGCG 1 cut(s) 757
BstV1I GCAGC 2 cut(s) 608, 691
BstZ17I GTATAC 1 cut(s) 869
BsuRI GGCC 2 cut(s) 698, 737
BtgI CCRYGG 2 cut(s) 290, 755
BtsCI GGATG 1 cut(s) 302
BtsI GCAGTG 2 cut(s) 359, 778
BtsIMutI CAGTG 5 cut(s) 309, 359, 373, 637, 778
Cac8I GCNNGC 2 cut(s) 264, 498
Cfr10I RCCGGY 1 cut(s) 79
Cfr42I CCGCGG 1 cut(s) 758
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 6 cut(s) 251, 263, 267, 291, 536, 832
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 433, 648
EaeI YGGCCR 1 cut(s) 735
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 290, 475
Eco31I GGTCTC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 290, 475
EcoT22I ATGCAT 2 cut(s) 264, 268
ErhI CCWWGG 2 cut(s) 290, 475
Esp3I CGTCTC 2 cut(s) 186, 453
FaeI CATG 6 cut(s) 254, 266, 270, 294, 539, 835
FaqI GGGAC 1 cut(s) 826
FatI CATG 6 cut(s) 250, 262, 266, 290, 535, 831
FblI GTMKAC 1 cut(s) 868
Fnu4HI GCNGC 8 cut(s) 27, 594, 597, 600, 705, 708, 735, 755
FokI GGATG 1 cut(s) 309
Fsp4HI GCNGC 8 cut(s) 27, 594, 597, 600, 705, 708, 735, 755
FspBI CTAG 2 cut(s) 530, 563
GluI GCNGC 8 cut(s) 27, 594, 597, 600, 705, 708, 735, 755
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 2 cut(s) 698, 737
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 203
Hin1II CATG 6 cut(s) 254, 266, 270, 294, 539, 835
HinfI GANTC 1 cut(s) 480
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 869
Hpy188I TCNGA 1 cut(s) 485
Hpy188III TCNNGA 4 cut(s) 17, 147, 374, 453
Hpy8I GTNNAC 1 cut(s) 869
HpyAV CCTTC 5 cut(s) 311, 655, 688, 724, 821
HpyCH4V TGCA 6 cut(s) 120, 137, 262, 266, 352, 496
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 497, 599, 704
HpyF3I CTNAG 2 cut(s) 433, 648
Hsp92II CATG 6 cut(s) 254, 266, 270, 294, 539, 835
KpnI GGTACC 1 cut(s) 80
KspI CCGCGG 1 cut(s) 758
LmnI GCTCC 3 cut(s) 236, 590, 855
Lsp1109I GCAGC 2 cut(s) 608, 691
LweI GCATC 2 cut(s) 249, 478
MaeI CTAG 2 cut(s) 530, 563
MaeIII GTNAC 1 cut(s) 776
MboII GAAGA 3 cut(s) 326, 354, 452
MluCI AATT 4 cut(s) 123, 198, 444, 873
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 3 cut(s) 149, 391, 449
Mph1103I ATGCAT 2 cut(s) 264, 268
MroXI GAANNNNTTC 2 cut(s) 428, 444
MseI TTAA 4 cut(s) 84, 165, 519, 543
MslI CAYNNNNRTG 1 cut(s) 295
MspA1I CMGCKG 2 cut(s) 704, 757
MspI CCGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 757
MwoI GCNNNNNNNGC 4 cut(s) 245, 497, 599, 704
NcoI CCATGG 1 cut(s) 290
NlaIII CATG 6 cut(s) 254, 266, 270, 294, 539, 835
NlaIV GGNNCC 2 cut(s) 78, 272
NmuCI GTSAC 1 cut(s) 776
NsiI ATGCAT 2 cut(s) 264, 268
NspI RCATGY 2 cut(s) 266, 835
PaeI GCATGC 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 453
PdmI GAANNNNTTC 2 cut(s) 428, 444
PfeI GAWTC 1 cut(s) 480
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 8 cut(s) 28, 595, 598, 601, 706, 709, 736, 756
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 78, 272
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 295
SacII CCGCGG 1 cut(s) 758
SaqAI TTAA 4 cut(s) 84, 165, 519, 543
SatI GCNGC 8 cut(s) 27, 594, 597, 600, 705, 708, 735, 755
SfaNI GCATC 2 cut(s) 249, 478
Sfr274I CTCGAG 1 cut(s) 453
Sfr303I CCGCGG 1 cut(s) 758
SgrBI CCGCGG 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SphI GCATGC 1 cut(s) 266
Sse9I AATT 4 cut(s) 123, 198, 444, 873
SsiI CCGC 8 cut(s) 26, 274, 594, 600, 708, 734, 755, 757
SspI AATATT 1 cut(s) 143
SspMI CTAG 2 cut(s) 530, 563
StyI CCWWGG 2 cut(s) 290, 475
TaqI TCGA 1 cut(s) 454
TaqII GACCGA 1 cut(s) 438
TasI AATT 4 cut(s) 123, 198, 444, 873
TauI GCSGC 6 cut(s) 29, 596, 602, 710, 737, 757
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 4 cut(s) 84, 165, 519, 543
Tru9I TTAA 4 cut(s) 84, 165, 519, 543
TscAI CASTG 5 cut(s) 316, 359, 373, 637, 785
TseFI GTSAC 1 cut(s) 776
TseI GCWGC 2 cut(s) 596, 704
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 2 cut(s) 28, 785
TspRI CASTG 5 cut(s) 316, 359, 373, 637, 785
XapI RAATTY 2 cut(s) 123, 444
XceI RCATGY 2 cut(s) 266, 835
XhoI CTCGAG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 868
XmnI GAANNNNTTC 2 cut(s) 428, 444
XspI CTAG 2 cut(s) 530, 563
Zsp2I ATGCAT 2 cut(s) 264, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.