Rh2CG529800

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000415
Physical Location & Seq
Reverse (-)
70547846 .. 70549004
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG529800.1

Sequence Viewer

Length: 963 bp
ATGATGAAAACCTTTCGAAAGACGGTGTTCCAATTTCTATCATTCATTGAGGGGAAATTCAATGAACTGAAGAAGATGAAGAACGTACGCATCAACTCATGTGATGTTTGCAATAAATCGAGTAATGAATTGCACAGCAAAAGATTTTGGGGCCAAAGAATTTGTTCGGGACATGTATCTGATGGGACTCCTAGATGTACTAGTTGTGGTAGATTTAAGCACGTAAAAACAAAATATGTGAACCTTGATGGTGGGCAACTTTGCTCGGATTGCTATTCTATTGCTATTTTGGATCCACAACAATTAGAAGCCATCATTGGAAACGTGCATGAATTCTACAAAAGTTTAAATCTTGAAGTGAATAAAGACATTCGAATTATGTTGGTCGACCAGGAAGAAATGTGCAAACGTTGCGGAGAAAAACCCAGTACAGAAGACGGTAATAGACGACTTTTTACTGGTGTTATATTTTTCCCTAGACGGCGTGCTCGTGTTCTCACGAGCATTACAAAATGTTCAAAAATTGGGGAAGATATCCAAGTGGAGAAAAAAACCGGCCCATCCCCGCGTAACAAAATTACAATTCTAGTTTTGTTCGGAGTACCAGACCTGTTGGTCGGTGGAACTTTGGCACACGAGATGATGCATGCATGGTTGCACCTTCAAGATTGTAGGAAAAAGTTCGAAGAAAAGGTTGAAGAAGGGATTTGTGAAGTGATGTGCCACAAGTGGATGGAAAGGTTCTGTTCCAGTGATGATCTTGATCACTCCTCATACAAAACCTATAAGCAGGGCCAGTTTAAGAGAAAATTGAAACAATTTCTGGTAGAATCAATGGAAACCCGGCCAGACATTTATGGCCAAGGATACAGAGAGGCTACTAGGGCAATTGAAAAGTTTGGCTTCCAAACTACTGTAAACCATATTGTTCAAAAAGAAAGTTTCCCTCACCGCGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

320

Amino Acids

37.17

Weight (kDa)

9.15

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 116 - 310 6.1e-36 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 614
AccI GTMKAC 1 cut(s) 387
AccII CGCG 2 cut(s) 568, 954
AciI CCGC 3 cut(s) 414, 566, 952
AclI AACGTT 1 cut(s) 409
AclWI GGATC 2 cut(s) 287, 300
AcoI YGGCCR 2 cut(s) 845, 859
AcsI RAATTY 3 cut(s) 56, 159, 332
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 4 cut(s) 87, 199, 430, 603
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 8 cut(s) 61, 356, 519, 665, 698, 814, 893, 932
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 1 cut(s) 390
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
Alw21I GWGCWC 1 cut(s) 490
AlwI GGATC 2 cut(s) 287, 300
AoxI GGCC 5 cut(s) 151, 556, 793, 845, 859
ApoI RAATTY 3 cut(s) 56, 159, 332
Asp700I GAANNNNTTC 2 cut(s) 163, 680
AspS9I GGNCC 3 cut(s) 151, 557, 793
AsuC2I CCSGG 1 cut(s) 844
AsuHPI GGTGA 1 cut(s) 941
AsuII TTCGAA 3 cut(s) 16, 373, 684
BalI TGGCCA 1 cut(s) 861
BamHI GGATCC 1 cut(s) 292
BauI CACGAG 3 cut(s) 489, 499, 635
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 490
BccI CCATC 5 cut(s) 176, 242, 320, 568, 727
BceAI ACGGC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 392
BciVI GTATCC 1 cut(s) 860
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 844
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 5 cut(s) 192, 201, 477, 587, 882
BfuI GTATCC 1 cut(s) 860
Bme1390I CCNGG 2 cut(s) 392, 844
BmgT120I GGNCC 3 cut(s) 151, 557, 793
BmiI GGNNCC 2 cut(s) 152, 294
BmrFI CCNGG 2 cut(s) 392, 844
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 2 cut(s) 99, 633
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 441
Bpu14I TTCGAA 3 cut(s) 16, 373, 684
BpuMI CCSGG 1 cut(s) 844
BsaAI YACGTR 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 862
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 4 cut(s) 426, 463, 750, 796
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 862
BseGI GGATG 2 cut(s) 560, 738
BseJI GATNNNNATC 1 cut(s) 762
BseNI ACTGG 4 cut(s) 426, 463, 750, 796
BseRI GAGGAG 1 cut(s) 760
Bsh1236I CGCG 2 cut(s) 568, 954
BshFI GGCC 5 cut(s) 153, 558, 795, 847, 861
BsiHKAI GWGCWC 1 cut(s) 490
BsiSI CCGG 2 cut(s) 555, 844
BsiWI CGTACG 1 cut(s) 85
BslFI GGGAC 2 cut(s) 183, 199
BsmFI GGGAC 2 cut(s) 183, 199
BsnI GGCC 5 cut(s) 153, 558, 795, 847, 861
Bsp119I TTCGAA 3 cut(s) 16, 373, 684
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 3 cut(s) 292, 757, 763
BspACI CCGC 3 cut(s) 414, 566, 952
BspANI GGCC 5 cut(s) 153, 558, 795, 847, 861
BspFNI CGCG 2 cut(s) 568, 954
BspLI GGNNCC 2 cut(s) 152, 294
BspPI GGATC 2 cut(s) 287, 300
BspT104I TTCGAA 3 cut(s) 16, 373, 684
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 4 cut(s) 426, 463, 750, 796
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 862
BssMI GATC 3 cut(s) 292, 757, 763
BssSI CACGAG 3 cut(s) 489, 499, 635
BssT1I CCWWGG 1 cut(s) 862
Bst2BI CACGAG 3 cut(s) 489, 499, 635
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 3 cut(s) 25, 440, 916
BstAPI GCANNNNNTGC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 223
BstBI TTCGAA 3 cut(s) 16, 373, 684
BstC8I GCNNGC 2 cut(s) 486, 648
BstF5I GGATG 2 cut(s) 560, 738
BstFNI CGCG 2 cut(s) 568, 954
BstKTI GATC 3 cut(s) 295, 760, 766
BstMBI GATC 3 cut(s) 292, 757, 763
BstMWI GCNNNNNNNGC 3 cut(s) 270, 411, 884
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 2 cut(s) 176, 650
BstSCI CCNGG 2 cut(s) 390, 842
BstUI CGCG 2 cut(s) 568, 954
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuI GTATCC 1 cut(s) 860
BsuRI GGCC 5 cut(s) 153, 558, 795, 847, 861
BtsCI GGATG 2 cut(s) 560, 738
BtsIMutI CAGTG 1 cut(s) 757
Cac8I GCNNGC 2 cut(s) 486, 648
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 3 cut(s) 151, 557, 793
Csp6I GTAC 4 cut(s) 86, 198, 429, 602
CviAII CATG 5 cut(s) 99, 173, 329, 647, 651
CviJI RGCY 8 cut(s) 153, 311, 558, 795, 847, 861, 878, 903
CviKI_1 RGCY 8 cut(s) 153, 311, 558, 795, 847, 861, 878, 903
CviQI GTAC 4 cut(s) 86, 198, 429, 602
DpnI GATC 3 cut(s) 294, 759, 765
DpnII GATC 3 cut(s) 292, 757, 763
DraI TTTAAA 1 cut(s) 348
DrdI GACNNNNNNGTC 1 cut(s) 614
DseDI GACNNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 2 cut(s) 845, 859
Eco130I CCWWGG 1 cut(s) 862
Eco32I GATATC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 390
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 862
EcoT22I ATGCAT 2 cut(s) 648, 652
ErhI CCWWGG 1 cut(s) 862
FaeI CATG 5 cut(s) 102, 176, 332, 650, 654
FalI AAGNNNNNCTT 2 cut(s) 887, 919
FaqI GGGAC 2 cut(s) 183, 199
FatI CATG 5 cut(s) 98, 172, 328, 646, 650
FauI CCCGC 1 cut(s) 573
FbaI TGATCA 1 cut(s) 763
FblI GTMKAC 1 cut(s) 387
FokI GGATG 2 cut(s) 547, 745
FspBI CTAG 5 cut(s) 192, 201, 477, 587, 882
HaeIII GGCC 5 cut(s) 153, 558, 795, 847, 861
HapII CCGG 2 cut(s) 555, 844
Hin1II CATG 5 cut(s) 102, 176, 332, 650, 654
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 2 cut(s) 187, 830
HpaII CCGG 2 cut(s) 555, 844
HphI GGTGA 1 cut(s) 941
Hpy166II GTNNAC 3 cut(s) 241, 388, 919
Hpy188I TCNGA 3 cut(s) 181, 268, 599
Hpy188III TCNNGA 5 cut(s) 168, 353, 499, 665, 761
Hpy8I GTNNAC 3 cut(s) 241, 388, 919
HpyAV CCTTC 2 cut(s) 671, 695
HpyCH4III ACNGT 3 cut(s) 25, 440, 916
HpyCH4IV ACGT 4 cut(s) 84, 222, 324, 409
HpyCH4V TGCA 7 cut(s) 111, 133, 328, 405, 646, 650, 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 411, 884
HpySE526I ACGT 4 cut(s) 84, 222, 324, 409
Hsp92II CATG 5 cut(s) 102, 176, 332, 650, 654
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 3 cut(s) 292, 757, 763
LweI GCATC 2 cut(s) 99, 633
MaeI CTAG 5 cut(s) 192, 201, 477, 587, 882
MaeII ACGT 4 cut(s) 84, 222, 324, 409
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 294, 759, 765
MboI GATC 3 cut(s) 292, 757, 763
MboII GAAGA 8 cut(s) 82, 85, 91, 407, 446, 542, 698, 710
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 861
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 4 cut(s) 43, 781, 868, 957
Mox20I TGGCCA 1 cut(s) 861
Mph1103I ATGCAT 2 cut(s) 648, 652
MroXI GAANNNNTTC 2 cut(s) 163, 680
MscI TGGCCA 1 cut(s) 861
MseI TTAA 3 cut(s) 216, 347, 801
Msp20I TGGCCA 1 cut(s) 861
MspI CCGG 2 cut(s) 555, 844
MspR9I CCNGG 2 cut(s) 392, 844
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 1 cut(s) 392
MvnI CGCG 2 cut(s) 568, 954
MwoI GCNNNNNNNGC 3 cut(s) 270, 411, 884
NciI CCSGG 1 cut(s) 844
NdeII GATC 3 cut(s) 292, 757, 763
NlaIII CATG 5 cut(s) 102, 176, 332, 650, 654
NlaIV GGNNCC 2 cut(s) 152, 294
NsiI ATGCAT 2 cut(s) 648, 652
NspI RCATGY 2 cut(s) 176, 650
NspV TTCGAA 3 cut(s) 16, 373, 684
PaeI GCATGC 1 cut(s) 650
PciI ACATGT 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 487
PdmI GAANNNNTTC 2 cut(s) 163, 680
PfeI GAWTC 1 cut(s) 830
Pfl23II CGTACG 1 cut(s) 85
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 223
PscI ACATGT 1 cut(s) 172
Psp1406I AACGTT 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspLI CGTACG 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 152, 294
PspPI GGNCC 3 cut(s) 151, 557, 793
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 4 cut(s) 87, 199, 430, 603
RsaNI GTAC 4 cut(s) 86, 198, 429, 602
SalI GTCGAC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 216, 347, 801
Sau3AI GATC 3 cut(s) 292, 757, 763
Sau96I GGNCC 3 cut(s) 151, 557, 793
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 2 cut(s) 392, 844
SduI GDGCHC 1 cut(s) 490
SfaNI GCATC 2 cut(s) 99, 633
SfuI TTCGAA 3 cut(s) 16, 373, 684
SpeI ACTAGT 1 cut(s) 200
SphI GCATGC 1 cut(s) 650
SsiI CCGC 3 cut(s) 414, 566, 952
SspMI CTAG 5 cut(s) 192, 201, 477, 587, 882
StyD4I CCNGG 2 cut(s) 390, 842
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 3 cut(s) 25, 440, 916
TaiI ACGT 4 cut(s) 87, 225, 327, 412
TaqI TCGA 5 cut(s) 16, 119, 373, 387, 684
TatI WGTACW 2 cut(s) 197, 428
TfiI GAWTC 1 cut(s) 830
Tru1I TTAA 3 cut(s) 216, 347, 801
Tru9I TTAA 3 cut(s) 216, 347, 801
TscAI CASTG 1 cut(s) 757
TspDTI ATGAA 6 cut(s) 20, 34, 78, 92, 141, 345
TspRI CASTG 1 cut(s) 757
XapI RAATTY 3 cut(s) 56, 159, 332
XceI RCATGY 2 cut(s) 176, 650
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 2 cut(s) 163, 680
XspI CTAG 5 cut(s) 192, 201, 477, 587, 882
Zsp2I ATGCAT 2 cut(s) 648, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.