RLG00000021192

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000415
Physical Location & Seq
Reverse (-)
72806813 .. 72807721
909 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021192

Sequence Viewer

Length: 909 bp
ATGAAGAATGAGTTGTTGCGTACATGTGATGTTTGCAATAAATCGAGTAACGAATTGCTGTATACTTTTTGGGGCCAAAGAATTTGTTCGGGACATGTATTTGATGGGACTCCTAGATGTACTGGTTGTGGTAGATTTAAGCACGTAAAAACAAAATATGTGAACCTTGATGGTGGACAACTTTGCTCGGATTGCTATTCTATTGCTATTTTGGATCCACAACAATTAGAACCCTTCATTGGAAACGTGAATGAATTCTACCAAAGTTTAAATCTTGAAGTGAATAAAGACATTCGAATATTGTTGGTCGACCAGGAAGAGATGTGCAAACGTTGCGGACCAAAACCCAGTACAGAAGACGGTTATAGACGACTATTTACTGGTATTATATTTTTCCCTAGACGGCGTGCTCGTGTTCTCACAAGCATTACAAAATGTTCAAAAATTGGGGAAGATATCCAAGTGGAGAAAAAAAGGGGCTCATCCCCGCGCAATAAAATTACAATTTTACTTCTGTTCGGATTTCCAGACCTGTTGGTCGGTGGAACTTTGGCGCACGAGATGATGCATGCGTGGTTGCACCTTCAAAATTGTAGCAAAGAATTGGAAGAAAAGGTTGAACAAGGGATTTGTGAAGTGATGAACCACAAGTGGATGGAAAGGTTCTGTTCCAGTGATGATCTTGATCACTCCTCATACAAAGCCTATAAGCAGGGCCAGTTTAAGAGAAAATTGAAACAATATCTGGGAGAATCAACGGAAACCTGTCCAGACATTTATGGCCAAGGATACAGAGAGGCCACTAGGGCGGTTGAAAAGTTTGGCTTCCAAACTACTCTAAACCATATTGTTCAAAACGGAAGTTTCCCTCACCGCGAAAAAAATCTCGCCACGAAAAGTAGGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

303

Amino Acids

34.75

Weight (kDa)

8.77

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 90 - 284 1.2e-34 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 536
AccI GTMKAC 2 cut(s) 62, 309
AccII CGCG 2 cut(s) 490, 876
AciI CCGC 4 cut(s) 336, 488, 809, 874
AclI AACGTT 1 cut(s) 331
AclWI GGATC 2 cut(s) 209, 222
AcoI YGGCCR 1 cut(s) 781
AcsI RAATTY 2 cut(s) 81, 254
AfaI GTAC 3 cut(s) 22, 121, 352
AfiI CCNNNNNNNGG 1 cut(s) 239
AflIII ACRYGT 2 cut(s) 23, 94
AgsI TTSAA 7 cut(s) 278, 441, 587, 620, 736, 815, 854
AjnI CCWGG 1 cut(s) 312
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
Alw21I GWGCWC 1 cut(s) 412
AlwI GGATC 2 cut(s) 209, 222
AoxI GGCC 4 cut(s) 73, 715, 781, 798
ApoI RAATTY 2 cut(s) 81, 254
Asp700I GAANNNNTTC 2 cut(s) 85, 254
AspLEI GCGC 2 cut(s) 492, 556
AspS9I GGNCC 3 cut(s) 73, 338, 715
AsuHPI GGTGA 1 cut(s) 863
AsuII TTCGAA 1 cut(s) 295
AvaII GGWCC 1 cut(s) 338
BalI TGGCCA 1 cut(s) 783
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 482
BauI CACGAG 2 cut(s) 411, 557
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 412
BccI CCATC 3 cut(s) 98, 164, 649
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 314
BciVI GTATCC 1 cut(s) 782
BclI TGATCA 1 cut(s) 685
BfaI CTAG 3 cut(s) 114, 399, 804
BfuI GTATCC 1 cut(s) 782
BglI GCCNNNNNGGC 1 cut(s) 806
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 3 cut(s) 73, 338, 715
BmiI GGNNCC 2 cut(s) 74, 216
BmrFI CCNGG 1 cut(s) 314
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 295
BsaAI YACGTR 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 784
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 5 cut(s) 127, 348, 385, 672, 718
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 784
BseGI GGATG 2 cut(s) 482, 660
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 5 cut(s) 127, 348, 385, 672, 718
BseRI GAGGAG 1 cut(s) 682
Bsh1236I CGCG 2 cut(s) 490, 876
BshFI GGCC 4 cut(s) 75, 717, 783, 800
BsiHKAI GWGCWC 1 cut(s) 412
BslFI GGGAC 2 cut(s) 105, 121
BslI CCNNNNNNNGG 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 105, 121
BsnI GGCC 4 cut(s) 75, 717, 783, 800
Bsp119I TTCGAA 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 412, 482
Bsp143I GATC 3 cut(s) 214, 679, 685
BspACI CCGC 4 cut(s) 336, 488, 809, 874
BspANI GGCC 4 cut(s) 75, 717, 783, 800
BspFNI CGCG 2 cut(s) 490, 876
BspLI GGNNCC 2 cut(s) 74, 216
BspPI GGATC 2 cut(s) 209, 222
BspT104I TTCGAA 1 cut(s) 295
BsrI ACTGG 5 cut(s) 127, 348, 385, 672, 718
BssECI CCNNGG 1 cut(s) 784
BssMI GATC 3 cut(s) 214, 679, 685
BssNAI GTATAC 1 cut(s) 63
BssSI CACGAG 2 cut(s) 411, 557
BssT1I CCWWGG 1 cut(s) 784
Bst1107I GTATAC 1 cut(s) 63
Bst2BI CACGAG 2 cut(s) 411, 557
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 408, 570
BstF5I GGATG 2 cut(s) 482, 660
BstFNI CGCG 2 cut(s) 490, 876
BstHHI GCGC 2 cut(s) 492, 556
BstKTI GATC 3 cut(s) 217, 682, 688
BstMBI GATC 3 cut(s) 214, 679, 685
BstMWI GCNNNNNNNGC 3 cut(s) 192, 333, 806
BstNI CCWGG 1 cut(s) 314
BstNSI RCATGY 3 cut(s) 27, 98, 572
BstSCI CCNGG 1 cut(s) 312
BstUI CGCG 2 cut(s) 490, 876
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 782
BsuRI GGCC 4 cut(s) 75, 717, 783, 800
BtsCI GGATG 2 cut(s) 482, 660
BtsIMutI CAGTG 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 408, 570
CfoI GCGC 2 cut(s) 492, 556
Cfr13I GGNCC 3 cut(s) 73, 338, 715
Csp6I GTAC 3 cut(s) 21, 120, 351
CviAII CATG 3 cut(s) 24, 95, 569
CviJI RGCY 7 cut(s) 75, 480, 704, 717, 783, 800, 825
CviKI_1 RGCY 7 cut(s) 75, 480, 704, 717, 783, 800, 825
CviQI GTAC 3 cut(s) 21, 120, 351
DpnI GATC 3 cut(s) 216, 681, 687
DpnII GATC 3 cut(s) 214, 679, 685
DraI TTTAAA 1 cut(s) 270
DrdI GACNNNNNNGTC 1 cut(s) 536
DseDI GACNNNNNNGTC 1 cut(s) 536
EaeI YGGCCR 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 482
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 312
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 784
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 3 cut(s) 27, 98, 572
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 2 cut(s) 105, 121
FatI CATG 3 cut(s) 23, 94, 568
FauI CCCGC 1 cut(s) 495
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 2 cut(s) 62, 309
FokI GGATG 2 cut(s) 469, 667
FriOI GRGCYC 1 cut(s) 482
FspBI CTAG 3 cut(s) 114, 399, 804
GlaI GCGC 2 cut(s) 491, 555
HaeIII GGCC 4 cut(s) 75, 717, 783, 800
HhaI GCGC 2 cut(s) 492, 556
Hin1II CATG 3 cut(s) 27, 98, 572
Hin6I GCGC 2 cut(s) 490, 554
HinP1I GCGC 2 cut(s) 490, 554
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 2 cut(s) 109, 752
HphI GGTGA 1 cut(s) 863
Hpy166II GTNNAC 4 cut(s) 63, 163, 176, 310
Hpy188I TCNGA 2 cut(s) 190, 521
Hpy188III TCNNGA 5 cut(s) 90, 275, 527, 683, 770
Hpy8I GTNNAC 4 cut(s) 63, 163, 176, 310
HpyAV CCTTC 2 cut(s) 244, 593
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 4 cut(s) 144, 246, 331, 905
HpyCH4V TGCA 4 cut(s) 36, 327, 568, 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 333, 806
HpySE526I ACGT 4 cut(s) 144, 246, 331, 905
Hsp92II CATG 3 cut(s) 27, 98, 572
HspAI GCGC 2 cut(s) 490, 554
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 3 cut(s) 214, 679, 685
LweI GCATC 1 cut(s) 555
MaeI CTAG 3 cut(s) 114, 399, 804
MaeII ACGT 4 cut(s) 144, 246, 331, 905
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 216, 681, 687
MboI GATC 3 cut(s) 214, 679, 685
MboII GAAGA 5 cut(s) 16, 329, 368, 464, 620
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 412, 482
MlsI TGGCCA 1 cut(s) 783
MluNI TGGCCA 1 cut(s) 783
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 3 cut(s) 703, 790, 879
Mox20I TGGCCA 1 cut(s) 783
Mph1103I ATGCAT 1 cut(s) 570
MroXI GAANNNNTTC 2 cut(s) 85, 254
MscI TGGCCA 1 cut(s) 783
MseI TTAA 3 cut(s) 138, 269, 723
Msp20I TGGCCA 1 cut(s) 783
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
MvnI CGCG 2 cut(s) 490, 876
MwoI GCNNNNNNNGC 3 cut(s) 192, 333, 806
NdeII GATC 3 cut(s) 214, 679, 685
NlaIII CATG 3 cut(s) 27, 98, 572
NlaIV GGNNCC 2 cut(s) 74, 216
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 3 cut(s) 27, 98, 572
NspV TTCGAA 1 cut(s) 295
PaeI GCATGC 1 cut(s) 572
PciI ACATGT 2 cut(s) 23, 94
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PdmI GAANNNNTTC 2 cut(s) 85, 254
PfeI GAWTC 1 cut(s) 752
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Ppu21I YACGTR 1 cut(s) 145
PscI ACATGT 2 cut(s) 23, 94
Psp1406I AACGTT 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 74, 216
PspPI GGNCC 3 cut(s) 73, 338, 715
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 3 cut(s) 22, 121, 352
RsaNI GTAC 3 cut(s) 21, 120, 351
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 3 cut(s) 138, 269, 723
Sau3AI GATC 3 cut(s) 214, 679, 685
Sau96I GGNCC 3 cut(s) 73, 338, 715
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 2 cut(s) 412, 482
SfaNI GCATC 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 295
SinI GGWCC 1 cut(s) 338
SphI GCATGC 1 cut(s) 572
SsiI CCGC 4 cut(s) 336, 488, 809, 874
SspI AATATT 1 cut(s) 300
SspMI CTAG 3 cut(s) 114, 399, 804
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 4 cut(s) 147, 249, 334, 908
TaqI TCGA 3 cut(s) 44, 295, 309
TatI WGTACW 2 cut(s) 119, 350
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 3 cut(s) 138, 269, 723
Tru9I TTAA 3 cut(s) 138, 269, 723
TscAI CASTG 1 cut(s) 679
TspDTI ATGAA 4 cut(s) 17, 226, 267, 656
TspGWI ACGGA 2 cut(s) 773, 873
TspRI CASTG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 2 cut(s) 81, 254
XceI RCATGY 3 cut(s) 27, 98, 572
XmiI GTMKAC 2 cut(s) 62, 309
XmnI GAANNNNTTC 2 cut(s) 85, 254
XspI CTAG 3 cut(s) 114, 399, 804
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.