RchiOBHm_Chr7g0191701

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000415
Physical Location & Seq
Reverse (-)
10361084 .. 10361865
782 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17132

Sequence Viewer

Length: 672 bp
ATGGGAGCAACCTTGGCACATGAGATGATGCATGGATGGTTCCGCCTTCAAGGTATGCCATGGGGATGTGAAAATAGGACTGAAGAAGGTATTTGCCAAGTAATGTCTTACAAATGGTTGCAGTGGTTTTCTTCCAGTGGTCTTGATACCTCGCACAAAACCATACAGCAAGTTCAATATACAAGAAAGCTGAAAGAGTTCTTAGTAGAAGAAATTCGGTGTCGAGAAGACGAAGTTTATGGCCAAGGATTCAGAGATGCTATGCATGCTGTTGAAACATTTGGCTTTAAAACCACACTAGACCATGCCGTTAAAAATGGAACTCTACCACTACCTATGATGGATAGTACACGCTCCACCGCCACAGCTACCGCCGTCACCACTACCACCAAGAAGTTAATAAGAAAGAATACTGGTGCCACCCCAATAACTCGGTTATTATGGAAGGCGACCAGCAATACAACCAAATCATTATGGAAGGCCACAGCTGCCGCAATAACTGACTTATTATGGAAGGCGGCCACCACCTACGAAACGCCGCGGTTTATTATTATGGAAGGTCACTGCCACAACCAATATCATCAAGGGCAAAGCCATAAAAACTTACAAGAAGGCATGTCCTTGTCCCCTATGCTCCTTGTATTTATTGGTATACTAATTGAACACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

223

Amino Acids

25.4

Weight (kDa)

9.05

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 2 - 103 2.1e-26 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 652
AccII CGCG 1 cut(s) 541
AciI CCGC 7 cut(s) 43, 360, 372, 492, 518, 539, 541
AcoI YGGCCR 2 cut(s) 241, 519
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 349
AgsI TTSAA 4 cut(s) 50, 176, 275, 662
AluBI AGCT 3 cut(s) 190, 368, 488
AluI AGCT 3 cut(s) 190, 368, 488
AoxI GGCC 3 cut(s) 241, 480, 519
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 213
Asp700I GAANNNNTTC 2 cut(s) 197, 213
AsuHPI GGTGA 1 cut(s) 370
BalI TGGCCA 1 cut(s) 243
BanI GGYRCC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 475
BccI CCATC 2 cut(s) 30, 334
BceAI ACGGC 2 cut(s) 293, 359
BfaI CTAG 1 cut(s) 299
BisI GCNGC 4 cut(s) 489, 492, 519, 539
BlsI GCNGC 4 cut(s) 490, 493, 520, 540
BmiI GGNNCC 2 cut(s) 41, 418
BmsI GCATC 2 cut(s) 18, 247
BpiI GAAGAC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 12, 59, 244, 539
Bse1I ACTGG 2 cut(s) 135, 418
BseDI CCNNGG 4 cut(s) 12, 59, 244, 539
BseGI GGATG 2 cut(s) 41, 71
BseNI ACTGG 2 cut(s) 135, 418
BseXI GCAGC 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 3 cut(s) 243, 482, 521
BshNI GGYRCC 1 cut(s) 416
BslFI GGGAC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 3 cut(s) 243, 482, 521
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 7 cut(s) 43, 360, 372, 492, 518, 539, 541
BspANI GGCC 3 cut(s) 243, 482, 521
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 41, 418
BspT107I GGYRCC 1 cut(s) 416
BsrI ACTGG 2 cut(s) 135, 418
BssECI CCNNGG 4 cut(s) 12, 59, 244, 539
BssNAI GTATAC 1 cut(s) 653
BssT1I CCWWGG 3 cut(s) 12, 59, 244
Bst1107I GTATAC 1 cut(s) 653
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 2 cut(s) 59, 539
BstF5I GGATG 2 cut(s) 41, 71
BstFNI CGCG 1 cut(s) 541
BstMWI GCNNNNNNNGC 3 cut(s) 14, 266, 488
BstNSI RCATGY 2 cut(s) 269, 619
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 234
BstZ17I GTATAC 1 cut(s) 653
BsuRI GGCC 3 cut(s) 243, 482, 521
BtgI CCRYGG 2 cut(s) 59, 539
BtsCI GGATG 2 cut(s) 41, 71
BtsI GCAGTG 2 cut(s) 128, 562
BtsIMutI CAGTG 3 cut(s) 128, 142, 562
Cac8I GCNNGC 1 cut(s) 267
Cfr42I CCGCGG 1 cut(s) 542
Csp6I GTAC 1 cut(s) 348
CviAII CATG 6 cut(s) 20, 32, 60, 266, 305, 616
CviJI RGCY 8 cut(s) 190, 243, 285, 368, 482, 488, 521, 594
CviKI_1 RGCY 8 cut(s) 190, 243, 285, 368, 482, 488, 521, 594
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 202
DraI TTTAAA 1 cut(s) 289
EaeI YGGCCR 2 cut(s) 241, 519
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 3 cut(s) 12, 59, 244
Eco57I CTGAAG 1 cut(s) 102
EcoT14I CCWWGG 3 cut(s) 12, 59, 244
EcoT22I ATGCAT 2 cut(s) 33, 267
ErhI CCWWGG 3 cut(s) 12, 59, 244
FaeI CATG 6 cut(s) 23, 35, 63, 269, 308, 619
FaqI GGGAC 1 cut(s) 610
FatI CATG 6 cut(s) 19, 31, 59, 265, 304, 615
FblI GTMKAC 1 cut(s) 652
Fnu4HI GCNGC 4 cut(s) 489, 492, 519, 539
FokI GGATG 2 cut(s) 48, 78
Fsp4HI GCNGC 4 cut(s) 489, 492, 519, 539
FspBI CTAG 1 cut(s) 299
GluI GCNGC 4 cut(s) 489, 492, 519, 539
HaeIII GGCC 3 cut(s) 243, 482, 521
Hin1II CATG 6 cut(s) 23, 35, 63, 269, 308, 619
HinfI GANTC 1 cut(s) 249
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 350, 653
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 2 cut(s) 143, 224
Hpy8I GTNNAC 2 cut(s) 350, 653
HpyAV CCTTC 7 cut(s) 56, 80, 439, 472, 508, 551, 605
HpyCH4V TGCA 3 cut(s) 31, 121, 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 266, 488
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 6 cut(s) 23, 35, 63, 269, 308, 619
KspI CCGCGG 1 cut(s) 542
LmnI GCTCC 3 cut(s) 5, 359, 639
LpnPI CCDG 4 cut(s) 148, 399, 466, 652
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 2 cut(s) 18, 247
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 2 cut(s) 376, 560
MboII GAAGA 4 cut(s) 95, 123, 221, 239
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 2 cut(s) 213, 657
MluNI TGGCCA 1 cut(s) 243
MnlI CCTC 1 cut(s) 160
Mox20I TGGCCA 1 cut(s) 243
Mph1103I ATGCAT 2 cut(s) 33, 267
MroXI GAANNNNTTC 2 cut(s) 197, 213
MscI TGGCCA 1 cut(s) 243
MseI TTAA 3 cut(s) 288, 312, 398
MslI CAYNNNNRTG 1 cut(s) 64
Msp20I TGGCCA 1 cut(s) 243
MspA1I CMGCKG 2 cut(s) 488, 541
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 3 cut(s) 14, 266, 488
NcoI CCATGG 1 cut(s) 59
NlaIII CATG 6 cut(s) 23, 35, 63, 269, 308, 619
NlaIV GGNNCC 2 cut(s) 41, 418
NmuCI GTSAC 2 cut(s) 376, 560
NsiI ATGCAT 2 cut(s) 33, 267
NspI RCATGY 2 cut(s) 269, 619
PaeI GCATGC 1 cut(s) 269
PdmI GAANNNNTTC 2 cut(s) 197, 213
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 4 cut(s) 490, 493, 520, 540
PspN4I GGNNCC 2 cut(s) 41, 418
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 64
SacII CCGCGG 1 cut(s) 542
SaqAI TTAA 3 cut(s) 288, 312, 398
SatI GCNGC 4 cut(s) 489, 492, 519, 539
SfaNI GCATC 2 cut(s) 18, 247
Sfr303I CCGCGG 1 cut(s) 542
SgrBI CCGCGG 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 64
SphI GCATGC 1 cut(s) 269
Sse9I AATT 2 cut(s) 213, 657
SsiI CCGC 7 cut(s) 43, 360, 372, 492, 518, 539, 541
SspMI CTAG 1 cut(s) 299
StyI CCWWGG 3 cut(s) 12, 59, 244
TaqI TCGA 1 cut(s) 223
TasI AATT 2 cut(s) 213, 657
TatI WGTACW 1 cut(s) 347
TauI GCSGC 3 cut(s) 494, 521, 541
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 3 cut(s) 288, 312, 398
Tru9I TTAA 3 cut(s) 288, 312, 398
TscAI CASTG 3 cut(s) 128, 142, 569
TseFI GTSAC 2 cut(s) 376, 560
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 2 cut(s) 376, 560
TspRI CASTG 3 cut(s) 128, 142, 569
XapI RAATTY 1 cut(s) 213
XceI RCATGY 2 cut(s) 269, 619
XmiI GTMKAC 1 cut(s) 652
XmnI GAANNNNTTC 2 cut(s) 197, 213
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 2 cut(s) 33, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.