Rh7DG123200

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000415
Physical Location & Seq
Reverse (-)
10417691 .. 10420715
3025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG123200.1

Sequence Viewer

Length: 915 bp
ATGAGCAGAATATCTCAAGATCGTTTTGTTGCTATGTTCATTCCAAGAATATCGGCTTACTTTACACCGTCAACGGCTGGCATACCATTACGAGTTAAAATGATGCTTATTTTAGCCAGATTTATTATACGCAGTATTCAAACGATAGAAAAATATTCGGGAAGTGGAGGTGGTATTAAAAAGGTTGTGAAGCTCCCACTAGGAGAGGCAATTGTACTTTTGTTTGGAACACCAGGTATAGAAATGGGAGCAACCTTGGCACATGAGATGATGCATGGATGGTTCCGCCTTCAAGGTATGCCATGGGGATGTGAAAATAGGACTGAAGAAGGTATTTGCCAAGTAATGTCTTACAAATGGTTGCAGTGGTTTTCTTCCAGTGGTCTTGATACCTCGCACAAAACCATACAGCAAGTTCAATATACAAGAAAGCTGAAAGAGTTCTTAGTAGAAGAAATTCGGTGTCGAGAAGACGAAGTTTATGGCCAAGGATTCAGAGATGCTATGCATGCTGTTGAAACATTTGGCTTTAAAACCACACTAGACCATGCCGTTAAAAATGGAACTCTACCACTACCTATGATGGATAGTACACGCTCCACCGCCACAGCTACCGCCGTCACCACTACCACCAAGAAGTTAATAAGAAAGAATACTAGTGCCACCCCAATAACTCGGTTATTATGGAAGGCGACCAGCAATACAACCAAATCATTATGGAAGGCCACAGCTGCCGCAATAACTGACTTATTATGGAAGGCGGCCACCACCTACGAAACGCCGCGGTTTATTATTATGGAAGGTCACTGCCACAACCAATATCATCAAGGGCAAAGCCATAAAAACTTACAAGAAGGCATGTCCTTGTCCCCTATGCTCCTTGTATTTATTGGTATACTAATTGAACACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

304

Amino Acids

34.31

Weight (kDa)

9.62

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 69 - 184 2.1e-31 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 895
AccII CGCG 1 cut(s) 784
AciI CCGC 7 cut(s) 286, 603, 615, 735, 761, 782, 784
AcoI YGGCCR 2 cut(s) 484, 762
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 2 cut(s) 216, 592
AgsI TTSAA 5 cut(s) 140, 293, 419, 518, 905
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 4 cut(s) 193, 433, 611, 731
AluI AGCT 4 cut(s) 193, 433, 611, 731
AoxI GGCC 3 cut(s) 484, 723, 762
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 1 cut(s) 456
Asp700I GAANNNNTTC 2 cut(s) 440, 456
AsuHPI GGTGA 1 cut(s) 613
BalI TGGCCA 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 718
BccI CCATC 2 cut(s) 273, 577
BceAI ACGGC 3 cut(s) 90, 536, 602
BciT130I CCWGG 1 cut(s) 234
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 3 cut(s) 200, 542, 657
BisI GCNGC 4 cut(s) 732, 735, 762, 782
BlsI GCNGC 4 cut(s) 733, 736, 763, 783
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 3 cut(s) 93, 261, 490
BpiI GAAGAC 1 cut(s) 477
BsaJI CCNNGG 4 cut(s) 255, 302, 487, 782
Bse1I ACTGG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 4 cut(s) 255, 302, 487, 782
BseGI GGATG 2 cut(s) 284, 314
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 718
Bsh1236I CGCG 1 cut(s) 784
BshFI GGCC 3 cut(s) 486, 725, 764
BslFI GGGAC 1 cut(s) 853
BsmFI GGGAC 1 cut(s) 853
BsnI GGCC 3 cut(s) 486, 725, 764
Bsp143I GATC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 7 cut(s) 286, 603, 615, 735, 761, 782, 784
BspANI GGCC 3 cut(s) 486, 725, 764
BspFNI CGCG 1 cut(s) 784
BspLI GGNNCC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 4 cut(s) 255, 302, 487, 782
BssMI GATC 1 cut(s) 19
BssNAI GTATAC 1 cut(s) 896
BssT1I CCWWGG 3 cut(s) 255, 302, 487
Bst1107I GTATAC 1 cut(s) 896
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 79, 510
BstDEI CTNAG 1 cut(s) 445
BstDSI CCRYGG 2 cut(s) 302, 782
BstF5I GGATG 2 cut(s) 284, 314
BstFNI CGCG 1 cut(s) 784
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 3 cut(s) 257, 509, 731
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 512, 862
BstSCI CCNGG 1 cut(s) 232
BstUI CGCG 1 cut(s) 784
BstV1I GCAGC 1 cut(s) 718
BstV2I GAAGAC 1 cut(s) 477
BstZ17I GTATAC 1 cut(s) 896
BsuRI GGCC 3 cut(s) 486, 725, 764
BtgI CCRYGG 2 cut(s) 302, 782
BtsCI GGATG 2 cut(s) 284, 314
BtsI GCAGTG 2 cut(s) 371, 805
BtsIMutI CAGTG 3 cut(s) 371, 385, 805
Cac8I GCNNGC 2 cut(s) 79, 510
Cfr42I CCGCGG 1 cut(s) 785
CsiI ACCWGGT 1 cut(s) 232
Csp6I GTAC 2 cut(s) 215, 591
CviAII CATG 6 cut(s) 263, 275, 303, 509, 548, 859
CviQI GTAC 2 cut(s) 215, 591
DdeI CTNAG 1 cut(s) 445
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
DraI TTTAAA 1 cut(s) 532
EaeI YGGCCR 2 cut(s) 484, 762
EciI GGCGGA 1 cut(s) 275
Eco130I CCWWGG 3 cut(s) 255, 302, 487
Eco57I CTGAAG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 3 cut(s) 255, 302, 487
EcoT22I ATGCAT 2 cut(s) 276, 510
ErhI CCWWGG 3 cut(s) 255, 302, 487
FaeI CATG 6 cut(s) 266, 278, 306, 512, 551, 862
FaqI GGGAC 1 cut(s) 853
FatI CATG 6 cut(s) 262, 274, 302, 508, 547, 858
FblI GTMKAC 1 cut(s) 895
Fnu4HI GCNGC 4 cut(s) 732, 735, 762, 782
FokI GGATG 2 cut(s) 291, 321
Fsp4HI GCNGC 4 cut(s) 732, 735, 762, 782
FspBI CTAG 3 cut(s) 200, 542, 657
GluI GCNGC 4 cut(s) 732, 735, 762, 782
HaeIII GGCC 3 cut(s) 486, 725, 764
Hin1II CATG 6 cut(s) 266, 278, 306, 512, 551, 862
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 1 cut(s) 492
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 3 cut(s) 72, 593, 896
Hpy188I TCNGA 1 cut(s) 497
Hpy188III TCNNGA 4 cut(s) 17, 159, 386, 467
Hpy8I GTNNAC 3 cut(s) 72, 593, 896
HpyAV CCTTC 7 cut(s) 299, 323, 682, 715, 751, 794, 848
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 274, 364, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 509, 731
HpyF3I CTNAG 1 cut(s) 445
Hsp92II CATG 6 cut(s) 266, 278, 306, 512, 551, 862
KspI CCGCGG 1 cut(s) 785
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 4 cut(s) 198, 248, 602, 882
LpnPI CCDG 7 cut(s) 63, 130, 219, 246, 391, 709, 895
Lsp1109I GCAGC 1 cut(s) 718
LweI GCATC 3 cut(s) 93, 261, 490
MabI ACCWGGT 1 cut(s) 232
MaeI CTAG 3 cut(s) 200, 542, 657
MaeIII GTNAC 2 cut(s) 619, 803
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 4 cut(s) 338, 366, 464, 482
MfeI CAATTG 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 486
MluCI AATT 3 cut(s) 210, 456, 900
MluNI TGGCCA 1 cut(s) 486
MnlI CCTC 3 cut(s) 161, 199, 403
Mox20I TGGCCA 1 cut(s) 486
Mph1103I ATGCAT 2 cut(s) 276, 510
MroXI GAANNNNTTC 2 cut(s) 440, 456
MscI TGGCCA 1 cut(s) 486
MseI TTAA 5 cut(s) 96, 177, 531, 555, 641
MslI CAYNNNNRTG 1 cut(s) 307
Msp20I TGGCCA 1 cut(s) 486
MspA1I CMGCKG 2 cut(s) 731, 784
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 784
MwoI GCNNNNNNNGC 3 cut(s) 257, 509, 731
NcoI CCATGG 1 cut(s) 302
NdeII GATC 1 cut(s) 19
NlaIII CATG 6 cut(s) 266, 278, 306, 512, 551, 862
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 2 cut(s) 619, 803
NsiI ATGCAT 2 cut(s) 276, 510
NspI RCATGY 2 cut(s) 512, 862
PaeI GCATGC 1 cut(s) 512
PdmI GAANNNNTTC 2 cut(s) 440, 456
PfeI GAWTC 1 cut(s) 492
PkrI GCNGC 4 cut(s) 733, 736, 763, 783
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 2 cut(s) 216, 592
RsaNI GTAC 2 cut(s) 215, 591
RseI CAYNNNNRTG 1 cut(s) 307
SacII CCGCGG 1 cut(s) 785
SaqAI TTAA 5 cut(s) 96, 177, 531, 555, 641
SatI GCNGC 4 cut(s) 732, 735, 762, 782
Sau3AI GATC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 234
SexAI ACCWGGT 1 cut(s) 232
SfaNI GCATC 3 cut(s) 93, 261, 490
Sfr303I CCGCGG 1 cut(s) 785
SgrBI CCGCGG 1 cut(s) 785
SmiMI CAYNNNNRTG 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
SpeI ACTAGT 1 cut(s) 656
SphI GCATGC 1 cut(s) 512
Sse9I AATT 3 cut(s) 210, 456, 900
SsiI CCGC 7 cut(s) 286, 603, 615, 735, 761, 782, 784
SspI AATATT 1 cut(s) 155
SspMI CTAG 3 cut(s) 200, 542, 657
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 3 cut(s) 255, 302, 487
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 466
TasI AATT 3 cut(s) 210, 456, 900
TatI WGTACW 2 cut(s) 214, 590
TauI GCSGC 3 cut(s) 737, 764, 784
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 5 cut(s) 96, 177, 531, 555, 641
Tru9I TTAA 5 cut(s) 96, 177, 531, 555, 641
TscAI CASTG 3 cut(s) 371, 385, 812
TseFI GTSAC 2 cut(s) 619, 803
TseI GCWGC 1 cut(s) 731
Tsp45I GTSAC 2 cut(s) 619, 803
TspDTI ATGAA 1 cut(s) 28
TspRI CASTG 3 cut(s) 371, 385, 812
XapI RAATTY 1 cut(s) 456
XceI RCATGY 2 cut(s) 512, 862
XmiI GTMKAC 1 cut(s) 895
XmnI GAANNNNTTC 2 cut(s) 440, 456
XspI CTAG 3 cut(s) 200, 542, 657
Zsp2I ATGCAT 2 cut(s) 276, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.