RchiOBHm_Chr1g0321451

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000415
Physical Location & Seq
Reverse (-)
8972092 .. 8973240
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55151

Sequence Viewer

Length: 927 bp
ATGTTTGCGACAAAGAGTCTGATATTGATTGATAATGAATTTTGGGATCAAAGAGTGTGTGAGAAACATGAATCCGATGGGACTCCGAGATGTTATACTTGTTTCAAATTTCTTAAAGAAACAAAATATTTGGACCTTACTGATGGTCGAAAACCTTGGTCAGGTTGTTCTTCCATTGCTATCATTGACCCAAAGGAATGCAAGCTCCTCATTCAATACGTACACGAATTCTACAGAAGTTTAAACCTCAAAATGGATGAAGACATTCGTGTTTTATTGTTGGACAAGAGTGCTATGCTCAAATTCAAACGTCCTGTTGACCTGAGGGGTACAGTATGGTATAGTTTTGGCGATTTGCGTGCTTTAGTGAGGATTAAAAATGTTCAAAAAGTGAAGGAAGTATTGAAGTGGAGAGAAAACTGGGGATGCACACATGAACACATCTGTGCCTTTTTATCAGTTTTGGGGACACATAGCTCATTTGTGCCCAACATATGTGTCCCCTTAGCCCTGTTTTCTAGTAGTGTGTTAAGACGTCCTCAGAAGTTAACTACGCAGCGAAGAAGTTCAGGCAATATAGAAGAAGCATTGATAGTTTTGTTTGGGATGGCGAATGTAGACATGGGTGCAACAGTGGCACATGGGATGATGCATGCGTGGTTGTACATTGCAGGTGTTACGGGATTAGAAGAAAAGGTTGAAGAAGGTTTTTGTGAGTTAATGTCATACATTTGGATGGAGTGTGGTGTTCACTCCTTGTACAAGACCAATGAGCAAGTTCAGCATACAAGAAAATTGAAAGACTTTATATCGAGTTCTCTGGAATACAGAGAAGAGGAAATTTATGGCCAAGGGTTTAGTGTTGCTATAAAGGCTGTTAGCAAATTTGGCCTTAAAAACGTACTGGAACAAAGGAAAAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

308

Amino Acids

35.52

Weight (kDa)

8.7

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 186 - 304 1.9e-22 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 662
AatII GACGTC 1 cut(s) 538
Acc36I ACCTGC 1 cut(s) 662
AccI GTMKAC 1 cut(s) 618
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 847
AcsI RAATTY 6 cut(s) 38, 107, 227, 302, 840, 884
AcyI GRCGYC 1 cut(s) 535
AfaI GTAC 5 cut(s) 222, 331, 665, 761, 903
AfiI CCNNNNNNNGG 2 cut(s) 161, 253
AgsI TTSAA 7 cut(s) 106, 215, 307, 386, 406, 701, 799
AhdI GACNNNNNGTC 1 cut(s) 15
AleI CACNNNNGTG 1 cut(s) 444
AluBI AGCT 2 cut(s) 205, 477
AluI AGCT 2 cut(s) 205, 477
AlwI GGATC 1 cut(s) 54
AoxI GGCC 2 cut(s) 847, 889
ApeKI GCWGC 1 cut(s) 556
ApoI RAATTY 6 cut(s) 38, 107, 227, 302, 840, 884
Asp700I GAANNNNTTC 2 cut(s) 264, 565
AspS9I GGNCC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 133
AxyI CCTNAGG 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 489
BalI TGGCCA 1 cut(s) 849
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 568
BccI CCATC 4 cut(s) 71, 137, 601, 730
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BfaI CTAG 1 cut(s) 519
BfmI CTRYAG 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 662
BisI GCNGC 1 cut(s) 557
BlsI GCNGC 1 cut(s) 558
Bme18I GGWCC 1 cut(s) 133
BmeRI GACNNNNNGTC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 2 cut(s) 416, 639
BmuI ACTGGG 1 cut(s) 430
BpiI GAAGAC 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 155, 850
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 253
Bse1I ACTGG 2 cut(s) 425, 909
Bse21I CCTNAGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 174, 666
BseDI CCNNGG 2 cut(s) 155, 850
BseGI GGATG 5 cut(s) 262, 431, 612, 651, 741
BseLI CCNNNNNNNGG 2 cut(s) 161, 253
BseMI GCAATG 2 cut(s) 174, 666
BseMII CTCAG 2 cut(s) 314, 554
BseNI ACTGG 2 cut(s) 425, 909
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 489
BseXI GCAGC 1 cut(s) 568
BshFI GGCC 2 cut(s) 849, 891
BslFI GGGAC 3 cut(s) 94, 481, 485
BslI CCNNNNNNNGG 2 cut(s) 161, 253
BsmFI GGGAC 3 cut(s) 94, 481, 485
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 2 cut(s) 849, 891
Bsp1286I GDGCHC 1 cut(s) 489
Bsp1407I TGTACA 2 cut(s) 663, 759
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 2 cut(s) 849, 891
BspCNI CTCAG 2 cut(s) 315, 553
BspMI ACCTGC 1 cut(s) 662
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 2 cut(s) 174, 666
BsrGI TGTACA 2 cut(s) 663, 759
BsrI ACTGG 2 cut(s) 425, 909
BssECI CCNNGG 2 cut(s) 155, 850
BssMI GATC 1 cut(s) 46
BssNI GRCGYC 1 cut(s) 535
BssT1I CCWWGG 2 cut(s) 155, 850
Bst4CI ACNGT 2 cut(s) 334, 634
Bst6I CTCTTC 1 cut(s) 828
BstACI GRCGYC 1 cut(s) 535
BstAUI TGTACA 2 cut(s) 663, 759
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 3 cut(s) 203, 360, 654
BstDEI CTNAG 3 cut(s) 323, 505, 540
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 5 cut(s) 262, 431, 612, 651, 741
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 4 cut(s) 635, 781, 872, 888
BstNSI RCATGY 1 cut(s) 656
BstSFI CTRYAG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 489
BstSNI TACGTA 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 568
BstV2I GAAGAC 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 323
BsuRI GGCC 2 cut(s) 849, 891
BtsCI GGATG 5 cut(s) 262, 431, 612, 651, 741
BtsIMutI CAGTG 1 cut(s) 639
BveI ACCTGC 1 cut(s) 662
Cac8I GCNNGC 3 cut(s) 203, 360, 654
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 5 cut(s) 221, 330, 664, 760, 902
CviAII CATG 5 cut(s) 68, 434, 622, 641, 653
CviJI RGCY 6 cut(s) 205, 477, 509, 849, 875, 891
CviKI_1 RGCY 6 cut(s) 205, 477, 509, 849, 875, 891
CviQI GTAC 5 cut(s) 221, 330, 664, 760, 902
DdeI CTNAG 3 cut(s) 323, 505, 540
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 243
DriI GACNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 1 cut(s) 828
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 828
Eco105I TACGTA 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 155, 850
Eco47I GGWCC 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 323
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 155, 850
EcoT22I ATGCAT 1 cut(s) 654
ErhI CCWWGG 2 cut(s) 155, 850
FaeI CATG 5 cut(s) 71, 437, 625, 644, 656
FaqI GGGAC 3 cut(s) 94, 481, 485
FatI CATG 5 cut(s) 67, 433, 621, 640, 652
FauNDI CATATG 1 cut(s) 494
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 1 cut(s) 557
FokI GGATG 5 cut(s) 269, 438, 619, 658, 748
Fsp4HI GCNGC 1 cut(s) 557
FspBI CTAG 1 cut(s) 519
GluI GCNGC 1 cut(s) 557
HaeIII GGCC 2 cut(s) 849, 891
Hin1I GRCGYC 1 cut(s) 535
Hin1II CATG 5 cut(s) 71, 437, 625, 644, 656
HincII GTYRAC 2 cut(s) 319, 549
HindII GTYRAC 2 cut(s) 319, 549
HinfI GANTC 3 cut(s) 16, 71, 82
HpaI GTTAAC 1 cut(s) 549
Hpy166II GTNNAC 5 cut(s) 223, 319, 549, 619, 751
Hpy188I TCNGA 4 cut(s) 21, 76, 87, 543
Hpy188III TCNNGA 1 cut(s) 821
Hpy8I GTNNAC 5 cut(s) 223, 319, 549, 619, 751
HpyAV CCTTC 2 cut(s) 388, 698
HpyCH4III ACNGT 2 cut(s) 334, 634
HpyCH4IV ACGT 4 cut(s) 219, 310, 535, 900
HpyCH4V TGCA 5 cut(s) 201, 429, 629, 652, 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 635, 781, 872, 888
HpyF3I CTNAG 3 cut(s) 323, 505, 540
HpySE526I ACGT 4 cut(s) 219, 310, 535, 900
Hsp92I GRCGYC 1 cut(s) 535
Hsp92II CATG 5 cut(s) 71, 437, 625, 644, 656
KspAI GTTAAC 1 cut(s) 549
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 9 cut(s) 147, 327, 335, 406, 524, 555, 657, 806, 890
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 2 cut(s) 416, 639
MaeI CTAG 1 cut(s) 519
MaeII ACGT 4 cut(s) 219, 310, 535, 900
MaeIII GTNAC 1 cut(s) 676
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 7 cut(s) 162, 272, 573, 593, 701, 713, 845
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 849
MluCI AATT 7 cut(s) 38, 107, 227, 302, 794, 840, 884
MluNI TGGCCA 1 cut(s) 849
MlyI GAGTC 2 cut(s) 25, 76
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 6 cut(s) 218, 257, 318, 363, 549, 829
Mox20I TGGCCA 1 cut(s) 849
Mph1103I ATGCAT 1 cut(s) 654
MroXI GAANNNNTTC 2 cut(s) 264, 565
MscI TGGCCA 1 cut(s) 849
MseI TTAA 7 cut(s) 114, 242, 375, 530, 548, 719, 894
MslI CAYNNNNRTG 2 cut(s) 444, 734
Msp20I TGGCCA 1 cut(s) 849
MssI GTTTAAAC 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 635, 781, 872, 888
NdeI CATATG 1 cut(s) 494
NdeII GATC 1 cut(s) 46
NlaIII CATG 5 cut(s) 71, 437, 625, 644, 656
NsiI ATGCAT 1 cut(s) 654
NspI RCATGY 1 cut(s) 656
OliI CACNNNNGTG 1 cut(s) 444
PaeI GCATGC 1 cut(s) 656
PaqCI CACCTGC 1 cut(s) 662
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 2 cut(s) 264, 565
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 558
PleI GAGTC 2 cut(s) 24, 76
PmeI GTTTAAAC 1 cut(s) 243
PpsI GAGTC 2 cut(s) 24, 76
Ppu21I YACGTR 1 cut(s) 220
PspPI GGNCC 1 cut(s) 133
RsaI GTAC 5 cut(s) 222, 331, 665, 761, 903
RsaNI GTAC 5 cut(s) 221, 330, 664, 760, 902
RseI CAYNNNNRTG 2 cut(s) 444, 734
SaqAI TTAA 7 cut(s) 114, 242, 375, 530, 548, 719, 894
SatI GCNGC 1 cut(s) 557
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 2 cut(s) 25, 76
SduI GDGCHC 1 cut(s) 489
SfaNI GCATC 2 cut(s) 416, 639
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 444, 734
SnaBI TACGTA 1 cut(s) 220
SphI GCATGC 1 cut(s) 656
Sse9I AATT 7 cut(s) 38, 107, 227, 302, 794, 840, 884
SspI AATATT 1 cut(s) 128
SspMI CTAG 1 cut(s) 519
StyI CCWWGG 2 cut(s) 155, 850
TaaI ACNGT 2 cut(s) 334, 634
TaiI ACGT 4 cut(s) 222, 313, 538, 903
TaqI TCGA 2 cut(s) 148, 812
TasI AATT 7 cut(s) 38, 107, 227, 302, 794, 840, 884
TatI WGTACW 2 cut(s) 663, 759
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 7 cut(s) 114, 242, 375, 530, 548, 719, 894
Tru9I TTAA 7 cut(s) 114, 242, 375, 530, 548, 719, 894
TscAI CASTG 1 cut(s) 639
TseI GCWGC 1 cut(s) 556
TspDTI ATGAA 4 cut(s) 51, 84, 273, 450
TspRI CASTG 1 cut(s) 639
VpaK11BI GGWCC 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 159
XapI RAATTY 6 cut(s) 38, 107, 227, 302, 840, 884
XceI RCATGY 1 cut(s) 656
XmiI GTMKAC 1 cut(s) 618
XmnI GAANNNNTTC 2 cut(s) 264, 565
XspI CTAG 1 cut(s) 519
ZraI GACGTC 1 cut(s) 536
Zsp2I ATGCAT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.