Rh2DG568400

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000415
Physical Location & Seq
Reverse (-)
79802490 .. 79802810
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG568400.1

Sequence Viewer

Length: 321 bp
ATGCATGCATGGTTGCACCTTCAAGATTGTAGGAAAAAATTCGAAGAAAAGGTTGAAGAAGGGATTTGTGAAGTGATGTGCCACAAGTGGATGGAAAGGTTCTGTTCCAGTGATGATCTTGATCACTCCTCATACAAAACCTATAAGCAGGGCCAGTTTAAGAGAAAATTGAAACAATTTCTGGTAGAATCAATGGAAACCCGGCCAGACATTTATGGCCAAGGATACAGAGAGGCTACTAGGGCAGTTGAAAAGTTTGGCTTCCAAACGACTCTAAACCATATTGTTCAAAAAGAAAGTTTCCCTCACCGCGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

106

Amino Acids

12.84

Weight (kDa)

8.34

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 1 - 96 6.9e-21 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 312
AciI CCGC 1 cut(s) 310
AcoI YGGCCR 2 cut(s) 203, 217
AcsI RAATTY 1 cut(s) 38
AgsI TTSAA 5 cut(s) 23, 56, 172, 251, 290
AoxI GGCC 3 cut(s) 151, 203, 217
ApoI RAATTY 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 299
AsuII TTCGAA 1 cut(s) 42
BalI TGGCCA 1 cut(s) 219
BccI CCATC 1 cut(s) 85
BciVI GTATCC 1 cut(s) 218
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 202
BfaI CTAG 1 cut(s) 240
BfuI GTATCC 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 108, 154
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 120
BseNI ACTGG 2 cut(s) 108, 154
BseRI GAGGAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 3 cut(s) 153, 205, 219
BsiSI CCGG 1 cut(s) 202
BsnI GGCC 3 cut(s) 153, 205, 219
Bsp119I TTCGAA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 115, 121
BspACI CCGC 1 cut(s) 310
BspANI GGCC 3 cut(s) 153, 205, 219
BspFNI CGCG 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 42
BsrI ACTGG 2 cut(s) 108, 154
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 115, 121
BssT1I CCWWGG 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 2 cut(s) 118, 124
BstMBI GATC 2 cut(s) 115, 121
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 200
BstUI CGCG 1 cut(s) 312
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 3 cut(s) 153, 205, 219
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 151
CviAII CATG 2 cut(s) 5, 9
CviJI RGCY 5 cut(s) 153, 205, 219, 236, 261
CviKI_1 RGCY 5 cut(s) 153, 205, 219, 236, 261
DpnI GATC 2 cut(s) 117, 123
DpnII GATC 2 cut(s) 115, 121
EaeI YGGCCR 2 cut(s) 203, 217
Eco130I CCWWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 220
EcoT22I ATGCAT 2 cut(s) 6, 10
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 8, 12
FaiI YATR 6 cut(s) 6, 10, 133, 144, 216, 282
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 2 cut(s) 4, 8
FbaI TGATCA 1 cut(s) 121
FokI GGATG 1 cut(s) 103
FspBI CTAG 1 cut(s) 240
HaeIII GGCC 3 cut(s) 153, 205, 219
HapII CCGG 1 cut(s) 202
Hin1II CATG 2 cut(s) 8, 12
HinfI GANTC 2 cut(s) 188, 271
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 299
Hpy188III TCNNGA 2 cut(s) 23, 119
HpyAV CCTTC 2 cut(s) 29, 53
HpyCH4V TGCA 3 cut(s) 4, 8, 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 8, 12
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 115, 121
LpnPI CCDG 6 cut(s) 121, 134, 167, 167, 215, 219
MaeI CTAG 1 cut(s) 240
MalI GATC 2 cut(s) 117, 123
MboI GATC 2 cut(s) 115, 121
MboII GAAGA 2 cut(s) 56, 68
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 3 cut(s) 38, 167, 176
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 3 cut(s) 139, 226, 315
Mox20I TGGCCA 1 cut(s) 219
Mph1103I ATGCAT 2 cut(s) 6, 10
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 1 cut(s) 219
MseI TTAA 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 219
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 202
NdeII GATC 2 cut(s) 115, 121
NlaIII CATG 2 cut(s) 8, 12
NsiI ATGCAT 2 cut(s) 6, 10
NspI RCATGY 1 cut(s) 8
NspV TTCGAA 1 cut(s) 42
PaeI GCATGC 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 188
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 2 cut(s) 115, 121
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 202
SetI ASST 4 cut(s) 21, 54, 101, 143
SfuI TTCGAA 1 cut(s) 42
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 38, 167, 176
SsiI CCGC 1 cut(s) 310
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 220
TaqI TCGA 1 cut(s) 42
TasI AATT 3 cut(s) 38, 167, 176
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 115
TspRI CASTG 1 cut(s) 115
XapI RAATTY 1 cut(s) 38
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 2 cut(s) 6, 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.