Rh6BG289500

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000415
Physical Location & Seq
Reverse (-)
51465418 .. 51467744
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG289500.1

Sequence Viewer

Length: 486 bp
ATGCAGAAAGCTCAGGACCCAGAATATTTGGACCTTAATGATAATGGCAGAAAACTTTGCTCATATTGTTCTAGCATTGCTACCTTGGATCCAAAGGAATGCATGCCCCTTATTCAAAATGTGCGTGAATTTTATAGAAGTTTAAACCTCGTGGTGGATGAAACCATTCCTTTTTTGTTGGTCGACAAGGATATGATGCTCAAATTCATACCAGTCAAAGAGACGATTGGTACAATATGGTACAAGGATAGCAGTGTGCGTGCTTGCACAACGATTAAGAAATGTTCAACGCGTGAAGGAATTATTAAGGTGGAGAAACACACAGAGAGGTTAACCCGACGTTGCAACTTATTAACCCTGCGACGAAAAAGTTCAGTAAAGGCATTGATAATTTTGTTCGGTACACCGGGAGTCCGCATAGGTGAAATAATGGCACATGAGATGATGCATGCATGGTTTTACCTTCAAGGTCTGAATCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

161

Amino Acids

18.62

Weight (kDa)

8.9

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 48 - 158 6.6e-15 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 292
AciI CCGC 1 cut(s) 415
AclWI GGATC 2 cut(s) 83, 96
AcsI RAATTY 2 cut(s) 128, 203
AfaI GTAC 3 cut(s) 232, 242, 403
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 3 cut(s) 116, 288, 467
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 83, 96
ApoI RAATTY 2 cut(s) 128, 203
Asp700I GAANNNNTTC 2 cut(s) 165, 370
AspS9I GGNCC 2 cut(s) 16, 31
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 2 cut(s) 16, 31
BamHI GGATCC 1 cut(s) 88
BauI CACGAG 1 cut(s) 149
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 2 cut(s) 16, 31
BmgT120I GGNCC 2 cut(s) 16, 31
BmiI GGNNCC 2 cut(s) 18, 90
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 2 cut(s) 186, 435
Bpu10I CCTNAGC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 415
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 18, 90
BspPI GGATC 2 cut(s) 83, 96
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 149
BstC8I GCNNGC 4 cut(s) 104, 261, 265, 450
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 292
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 88
BstNSI RCATGY 2 cut(s) 106, 452
BstSCI CCNGG 1 cut(s) 406
BstUI CGCG 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 4 cut(s) 104, 261, 265, 450
Cfr13I GGNCC 2 cut(s) 16, 31
Csp6I GTAC 3 cut(s) 231, 241, 402
CviAII CATG 4 cut(s) 103, 437, 449, 453
CviJI RGCY 1 cut(s) 11
CviKI_1 RGCY 1 cut(s) 11
CviQI GTAC 3 cut(s) 231, 241, 402
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 16, 31
EcoO109I RGGNCCY 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 3 cut(s) 104, 450, 454
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 4 cut(s) 106, 440, 452, 456
FatI CATG 4 cut(s) 102, 436, 448, 452
FblI GTMKAC 1 cut(s) 183
FokI GGATG 1 cut(s) 170
FspBI CTAG 1 cut(s) 72
HapII CCGG 1 cut(s) 407
Hin1II CATG 4 cut(s) 106, 440, 452, 456
HincII GTYRAC 2 cut(s) 184, 333
HindII GTYRAC 2 cut(s) 184, 333
HinfI GANTC 2 cut(s) 411, 475
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 1 cut(s) 407
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 3 cut(s) 184, 333, 404
Hpy188I TCNGA 1 cut(s) 474
Hpy188III TCNNGA 2 cut(s) 14, 479
Hpy8I GTNNAC 3 cut(s) 184, 333, 404
Hpy99I CGWCG 2 cut(s) 342, 366
HpyAV CCTTC 2 cut(s) 290, 473
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 6 cut(s) 4, 102, 267, 345, 448, 452
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 4 cut(s) 106, 440, 452, 456
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 33, 225, 371, 420
LweI GCATC 2 cut(s) 186, 435
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 340
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MflI RGATCY 1 cut(s) 88
MluCI AATT 4 cut(s) 128, 203, 300, 390
MluI ACGCGT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 420
MnlI CCTC 2 cut(s) 158, 321
Mph1103I ATGCAT 3 cut(s) 104, 450, 454
MroXI GAANNNNTTC 2 cut(s) 165, 370
MseI TTAA 7 cut(s) 36, 143, 276, 306, 332, 353, 484
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 408
MssI GTTTAAAC 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 104
MvnI CGCG 1 cut(s) 292
NciI CCSGG 1 cut(s) 408
NdeII GATC 1 cut(s) 88
NlaIII CATG 4 cut(s) 106, 440, 452, 456
NlaIV GGNNCC 2 cut(s) 18, 90
NsiI ATGCAT 3 cut(s) 104, 450, 454
NspI RCATGY 2 cut(s) 106, 452
PaeI GCATGC 2 cut(s) 106, 452
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 165, 370
PfeI GAWTC 1 cut(s) 475
PleI GAGTC 1 cut(s) 419
PmeI GTTTAAAC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 16
Psp5II RGGWCCY 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 18, 90
PspPI GGNCC 2 cut(s) 16, 31
PspPPI RGGWCCY 1 cut(s) 16
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 3 cut(s) 232, 242, 403
RsaNI GTAC 3 cut(s) 231, 241, 402
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 7 cut(s) 36, 143, 276, 306, 332, 353, 484
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 2 cut(s) 16, 31
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 408
SfaNI GCATC 2 cut(s) 186, 435
SinI GGWCC 2 cut(s) 16, 31
SphI GCATGC 2 cut(s) 106, 452
Sse9I AATT 4 cut(s) 128, 203, 300, 390
SsiI CCGC 1 cut(s) 415
SspI AATATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 128, 203, 300, 390
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 7 cut(s) 36, 143, 276, 306, 332, 353, 484
Tru9I TTAA 7 cut(s) 36, 143, 276, 306, 332, 353, 484
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 174, 196
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 16, 31
XapI RAATTY 2 cut(s) 128, 203
XceI RCATGY 2 cut(s) 106, 452
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 2 cut(s) 165, 370
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 3 cut(s) 104, 450, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.