Rroxscaffold_7G00185190

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000415
Physical Location & Seq
Forward (+)
24632289 .. 24634583
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185190.1

Sequence Viewer

Length: 669 bp
ATGTCTGACATTAATACCTGTGATGTTTGCAACAAGAAGTCTGTAAGTATTCACAACGCCATCACGCCGGCAACCTCCACCTCCTTATTCGCCGTCATCTCTCTCACTCCACTGTCGTTCGTCGAGTGGGAGGACTGCCGCTTCTTATTTTCATGCAGACTGGACTGGTGCGGCTCCCATTCTGGGATCAAAGATGCTGTCGGGAACATAACTCCGATGGTACATTGCGGTAAGCCATGGGAATGGGAAAGAAGAGTTGAAGAAGGCATTTGCGAAGTAATGTATTACAAGTGGTTGAAATGGTTTTGTTCTAGTACTGGATTTCATTCTTCTTTCAAAACCAAAGATCATGCTCAATACGCAAGAAAGTTGATAAAGTACTTGGCACAAGGGATTGAGACGCGGGAAGACGAAGTTTATGGCCAAGGGTTCAGAGATGCTATGCTAACGGTTACAAAATTAGGCTTCAAAACTACACTGAACTATACCCTTAAAAACGGAACTCTTCCTGTAGCTCCACCGAAAACCGAGCTATTGTGGAAGGCCACCACTAGTGGTGCTACATTGTTATTGAAGGCCACTGCCACCACCATAACTGATTTATTATGGAAGTCCACCGGCCGCTGTTATGGAAGGCCATCACCACCAAAACTAGGGCCAAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

222

Amino Acids

24.93

Weight (kDa)

9.01

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 84 - 161 1.5e-13 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 403
AciI CCGC 5 cut(s) 139, 171, 228, 403, 622
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 2 cut(s) 421, 619
AfaI GTAC 3 cut(s) 222, 316, 380
AfiI CCNNNNNNNGG 2 cut(s) 183, 653
AgsI TTSAA 5 cut(s) 260, 298, 337, 469, 574
AhlI ACTAGT 1 cut(s) 551
AluBI AGCT 2 cut(s) 515, 532
AluI AGCT 2 cut(s) 515, 532
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 194
AoxI GGCC 6 cut(s) 421, 543, 576, 619, 635, 656
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
AseI ATTAAT 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 1 cut(s) 633
BalI TGGCCA 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 414
BccI CCATC 3 cut(s) 68, 211, 646
BceAI ACGGC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 3 cut(s) 312, 552, 653
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 3 cut(s) 139, 172, 622
BlsI GCNGC 3 cut(s) 140, 173, 623
BmcAI AGTACT 2 cut(s) 316, 380
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 2 cut(s) 184, 427
BpiI GAAGAC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 236, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 653
Bse118I RCCGGY 2 cut(s) 67, 617
Bse1I ACTGG 3 cut(s) 165, 170, 322
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 236, 424
BseLI CCNNNNNNNGG 2 cut(s) 183, 653
BseMI GCAATG 1 cut(s) 223
BseNI ACTGG 3 cut(s) 165, 170, 322
BseX3I CGGCCG 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 622
BshFI GGCC 6 cut(s) 423, 545, 578, 621, 637, 658
BsiEI CGRYCG 1 cut(s) 622
BsiSI CCGG 2 cut(s) 68, 618
BslI CCNNNNNNNGG 2 cut(s) 183, 653
BsmAI GTCTC 1 cut(s) 392
BsmBI CGTCTC 1 cut(s) 392
BsnI GGCC 6 cut(s) 423, 545, 578, 621, 637, 658
Bsp143I GATC 2 cut(s) 186, 346
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 5 cut(s) 139, 171, 228, 403, 622
BspANI GGCC 6 cut(s) 423, 545, 578, 621, 637, 658
BspFNI CGCG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 223
BsrFI RCCGGY 2 cut(s) 67, 617
BsrI ACTGG 3 cut(s) 165, 170, 322
BssAI RCCGGY 2 cut(s) 67, 617
BssECI CCNNGG 2 cut(s) 236, 424
BssMI GATC 2 cut(s) 186, 346
BssT1I CCWWGG 2 cut(s) 236, 424
Bst4CI ACNGT 2 cut(s) 114, 451
Bst6I CTCTTC 2 cut(s) 247, 510
BstC8I GCNNGC 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 403
BstKTI GATC 2 cut(s) 189, 349
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 2 cut(s) 186, 346
BstMCI CGRYCG 1 cut(s) 622
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 510
BstUI CGCG 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 619
BsuRI GGCC 6 cut(s) 423, 545, 578, 621, 637, 658
BtgI CCRYGG 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 3 cut(s) 110, 476, 579
Cac8I GCNNGC 1 cut(s) 69
Cfr10I RCCGGY 2 cut(s) 67, 617
Cfr13I GGNCC 1 cut(s) 656
CseI GACGC 1 cut(s) 409
Csp6I GTAC 3 cut(s) 221, 315, 379
CviAII CATG 4 cut(s) 153, 237, 350, 666
CviQI GTAC 3 cut(s) 221, 315, 379
DpnI GATC 2 cut(s) 188, 348
DpnII GATC 2 cut(s) 186, 346
EaeI YGGCCR 2 cut(s) 421, 619
EagI CGGCCG 1 cut(s) 619
Eam1104I CTCTTC 2 cut(s) 247, 510
EarI CTCTTC 2 cut(s) 247, 510
EclXI CGGCCG 1 cut(s) 619
Eco130I CCWWGG 2 cut(s) 236, 424
Eco52I CGGCCG 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 236, 424
ErhI CCWWGG 2 cut(s) 236, 424
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 4 cut(s) 156, 240, 353, 669
FatI CATG 4 cut(s) 152, 236, 349, 665
FauI CCCGC 1 cut(s) 396
Fnu4HI GCNGC 3 cut(s) 139, 172, 622
Fsp4HI GCNGC 3 cut(s) 139, 172, 622
FspBI CTAG 3 cut(s) 312, 552, 653
GluI GCNGC 3 cut(s) 139, 172, 622
HaeIII GGCC 6 cut(s) 423, 545, 578, 621, 637, 658
HapII CCGG 2 cut(s) 68, 618
HgaI GACGC 1 cut(s) 409
Hin1II CATG 4 cut(s) 156, 240, 353, 669
HpaII CCGG 2 cut(s) 68, 618
HphI GGTGA 1 cut(s) 633
Hpy166II GTNNAC 1 cut(s) 615
Hpy188I TCNGA 3 cut(s) 7, 216, 434
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 615
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 257, 535, 568, 627
HpyCH4III ACNGT 2 cut(s) 114, 451
HpyCH4V TGCA 2 cut(s) 30, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
Hsp92II CATG 4 cut(s) 156, 240, 353, 669
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 186, 346
LmnI GCTCC 2 cut(s) 179, 520
LpnPI CCDG 8 cut(s) 31, 81, 146, 151, 168, 303, 522, 631
LweI GCATC 2 cut(s) 184, 427
MaeI CTAG 3 cut(s) 312, 552, 653
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 188, 348
MboI GATC 2 cut(s) 186, 346
MboII GAAGA 5 cut(s) 264, 272, 321, 419, 497
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 1 cut(s) 458
MluNI TGGCCA 1 cut(s) 423
MnlI CCTC 3 cut(s) 85, 91, 124
Mox20I TGGCCA 1 cut(s) 423
MroNI GCCGGC 1 cut(s) 67
MscI TGGCCA 1 cut(s) 423
MseI TTAA 2 cut(s) 12, 492
MslI CAYNNNNRTG 1 cut(s) 241
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 624
MspI CCGG 2 cut(s) 68, 618
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 1 cut(s) 359
NaeI GCCGGC 1 cut(s) 69
NcoI CCATGG 1 cut(s) 236
NdeII GATC 2 cut(s) 186, 346
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 4 cut(s) 156, 240, 353, 669
NlaIV GGNNCC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 140, 173, 623
PshBI ATTAAT 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 656
RsaI GTAC 3 cut(s) 222, 316, 380
RsaNI GTAC 3 cut(s) 221, 315, 379
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 2 cut(s) 12, 492
SatI GCNGC 3 cut(s) 139, 172, 622
Sau3AI GATC 2 cut(s) 186, 346
Sau96I GGNCC 1 cut(s) 656
ScaI AGTACT 2 cut(s) 316, 380
SetI ASST 5 cut(s) 20, 77, 83, 517, 534
SfaNI GCATC 2 cut(s) 184, 427
SfcI CTRYAG 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 241
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 1 cut(s) 458
SsiI CCGC 5 cut(s) 139, 171, 228, 403, 622
SspMI CTAG 3 cut(s) 312, 552, 653
StyI CCWWGG 2 cut(s) 236, 424
TaaI ACNGT 2 cut(s) 114, 451
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 458
TatI WGTACW 2 cut(s) 314, 378
TauI GCSGC 3 cut(s) 141, 174, 624
Tru1I TTAA 2 cut(s) 12, 492
Tru9I TTAA 2 cut(s) 12, 492
TscAI CASTG 3 cut(s) 117, 483, 586
TspDTI ATGAA 2 cut(s) 141, 314
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 3 cut(s) 117, 483, 586
VspI ATTAAT 1 cut(s) 12
XspI CTAG 3 cut(s) 312, 552, 653
ZrmI AGTACT 2 cut(s) 316, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.