RLG00000025443

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000415
Physical Location & Seq
Forward (+)
45790611 .. 45791704
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025443

Sequence Viewer

Length: 462 bp
ATGATGGTCTATGTGCAGCAAGCTGGAGATCAATATTTGGACTTAGGTGACGGCCGATTAGCTTGCTCAGATTGCTCCTCCATAACTGCTATGGATCCGAAGGACTTCAAGCCCCTTATTAAAATGGTGCATAAATTTTATAGAAGCTTAAATCTCAAATTAGTTGAAAACATTTCTGTATTATTGGCAGATAAACATGAGATTTACAAGCTTTGCATCAGCAAAGGTACGCTTGACGTAGGTACAGAAGTACTTGGCTTAACAATATGTGGTGTCCTTACTTTCATCAGACGGACTGATTTTGTGCAATTGTATGAGAAGCAGCCAAGGCCGCCTTCGCAGCAGCCAAAGCCACTACACAACTGCAAAAGGCACCTCGCCACACCCAAACTAGTCTTGGCAAAGTTGCCAAGTGGCATGGTTCTGTCTGTTGCAGGGAACGCAGTTTTTTTACCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

154

Amino Acids

17.01

Weight (kDa)

9.13

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 372
AciI CCGC 1 cut(s) 332
AclWI GGATC 2 cut(s) 89, 102
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 3 cut(s) 229, 244, 252
AgsI TTSAA 2 cut(s) 109, 167
AhlI ACTAGT 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 4 cut(s) 23, 62, 147, 211
AluI AGCT 4 cut(s) 23, 62, 147, 211
AlwI GGATC 2 cut(s) 89, 102
AoxI GGCC 2 cut(s) 52, 329
ApeKI GCWGC 4 cut(s) 16, 322, 340, 343
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BamHI GGATCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 372
BbvI GCAGC 4 cut(s) 28, 334, 352, 355
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BcuI ACTAGT 1 cut(s) 391
BfaI CTAG 1 cut(s) 392
BisI GCNGC 5 cut(s) 17, 323, 332, 341, 344
BlsI GCNGC 5 cut(s) 18, 324, 333, 342, 345
BmcAI AGTACT 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 96, 374
BmsI GCATC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 67
BseX3I CGGCCG 1 cut(s) 52
BseXI GCAGC 4 cut(s) 28, 334, 352, 355
BsgI GTGCAG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 54, 331
BshNI GGYRCC 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 55
BsnI GGCC 2 cut(s) 54, 331
Bsp143I GATC 2 cut(s) 28, 94
BspACI CCGC 1 cut(s) 332
BspANI GGCC 2 cut(s) 54, 331
BspCNI CTCAG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 96, 374
BspPI GGATC 2 cut(s) 89, 102
BspT107I GGYRCC 1 cut(s) 372
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 2 cut(s) 28, 94
BssT1I CCWWGG 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 21, 64
BstDEI CTNAG 2 cut(s) 43, 67
BstKTI GATC 2 cut(s) 31, 97
BstMBI GATC 2 cut(s) 28, 94
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 7 cut(s) 72, 328, 331, 337, 340, 349, 440
BstV1I GCAGC 4 cut(s) 28, 334, 352, 355
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BstZI CGGCCG 1 cut(s) 52
BsuRI GGCC 2 cut(s) 54, 331
Cac8I GCNNGC 2 cut(s) 21, 64
Csp6I GTAC 3 cut(s) 228, 243, 251
CviAII CATG 2 cut(s) 197, 418
CviQI GTAC 3 cut(s) 228, 243, 251
DdeI CTNAG 2 cut(s) 43, 67
DpnI GATC 2 cut(s) 30, 96
DpnII GATC 2 cut(s) 28, 94
EaeI YGGCCR 1 cut(s) 52
EagI CGGCCG 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 326
Eco52I CGGCCG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 2 cut(s) 200, 421
FaiI YATR 9 cut(s) 12, 83, 92, 132, 141, 198, 268, 315, 419
FalI AAGNNNNNCTT 4 cut(s) 216, 248, 319, 351
FatI CATG 2 cut(s) 196, 417
Fnu4HI GCNGC 5 cut(s) 17, 323, 332, 341, 344
Fsp4HI GCNGC 5 cut(s) 17, 323, 332, 341, 344
FspBI CTAG 1 cut(s) 392
GluI GCNGC 5 cut(s) 17, 323, 332, 341, 344
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 2 cut(s) 54, 331
Hin1II CATG 2 cut(s) 200, 421
HindIII AAGCTT 2 cut(s) 145, 209
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 3 cut(s) 70, 99, 290
HpyAV CCTTC 2 cut(s) 94, 345
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 6 cut(s) 16, 130, 216, 307, 366, 434
HpyF10VI GCNNNNNNNGC 7 cut(s) 72, 328, 331, 337, 340, 349, 440
HpyF3I CTNAG 2 cut(s) 43, 67
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 200, 421
Kzo9I GATC 2 cut(s) 28, 94
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 2 cut(s) 9, 420
Lsp1109I GCAGC 4 cut(s) 28, 334, 352, 355
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 30, 96
MboI GATC 2 cut(s) 28, 94
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 1 cut(s) 94
MluCI AATT 3 cut(s) 134, 158, 308
MnlI CCTC 2 cut(s) 88, 386
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 3 cut(s) 120, 149, 260
MunI CAATTG 1 cut(s) 308
MwoI GCNNNNNNNGC 7 cut(s) 72, 328, 331, 337, 340, 349, 440
NdeII GATC 2 cut(s) 28, 94
NlaIII CATG 2 cut(s) 200, 421
NlaIV GGNNCC 2 cut(s) 96, 374
NmuCI GTSAC 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 104
PkrI GCNGC 5 cut(s) 18, 324, 333, 342, 345
PspN4I GGNNCC 2 cut(s) 96, 374
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 3 cut(s) 229, 244, 252
RsaNI GTAC 3 cut(s) 228, 243, 251
SaqAI TTAA 3 cut(s) 120, 149, 260
SatI GCNGC 5 cut(s) 17, 323, 332, 341, 344
Sau3AI GATC 2 cut(s) 28, 94
ScaI AGTACT 1 cut(s) 252
SetI ASST 9 cut(s) 25, 49, 64, 149, 213, 229, 240, 244, 378
SfaNI GCATC 1 cut(s) 225
SpeI ACTAGT 1 cut(s) 391
Sse9I AATT 3 cut(s) 134, 158, 308
SsiI CCGC 1 cut(s) 332
SspI AATATT 1 cut(s) 35
SspMI CTAG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 326
TaiI ACGT 1 cut(s) 240
TasI AATT 3 cut(s) 134, 158, 308
TatI WGTACW 1 cut(s) 250
TauI GCSGC 1 cut(s) 334
Tru1I TTAA 3 cut(s) 120, 149, 260
Tru9I TTAA 3 cut(s) 120, 149, 260
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 4 cut(s) 16, 322, 340, 343
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 274
TspGWI ACGGA 1 cut(s) 307
XapI RAATTY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 2 cut(s) 88, 394
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.