RchiOBHm_Chr6g0285701

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000415
Physical Location & Seq
Reverse (-)
49008589 .. 49009151
563 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25628

Sequence Viewer

Length: 276 bp
ATGGCTACTCAGTGCGGAGTCTGCAATGTATATTCTAAAGCTCAGGACCCAGAATATTTGGACCTTGATGATAATGGCAGAAAACTTTGCTCATATTGTTCTAGCATTGCTACCTTGGATCCAGAGGAATGCATGCCCCTTATTCAAAATGTGCGTGAATTTTACAGAAGTTTAAACCTCGTGGTGGATGAAACCATTCCTTTTTTGTTGGTCGACAAGGATATGATGCTCAAATTCATACCAGGTATATTATTATATATGATTCGTTTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

91

Amino Acids

10.44

Weight (kDa)

4.43

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AciI CCGC 1 cut(s) 15
AclWI GGATC 2 cut(s) 113, 126
AcsI RAATTY 2 cut(s) 158, 233
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AlwI GGATC 2 cut(s) 113, 126
ApoI RAATTY 2 cut(s) 158, 233
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 46, 61
AvaII GGWCC 2 cut(s) 46, 61
BamHI GGATCC 1 cut(s) 118
BauI CACGAG 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 243
BfaI CTAG 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 2 cut(s) 46, 61
BmgT120I GGNCC 2 cut(s) 46, 61
BmiI GGNNCC 2 cut(s) 48, 120
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse3DI GCAATG 2 cut(s) 31, 105
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 2 cut(s) 31, 105
BseMII CTCAG 2 cut(s) 23, 56
BslI CCNNNNNNNGG 1 cut(s) 184
BsmI GAATGC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 15
BspCNI CTCAG 2 cut(s) 22, 55
BspLI GGNNCC 2 cut(s) 48, 120
BspPI GGATC 2 cut(s) 113, 126
BsrDI GCAATG 2 cut(s) 31, 105
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 118
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 9, 42
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 46, 61
CsiI ACCWGGT 1 cut(s) 241
CviAII CATG 1 cut(s) 133
CviJI RGCY 2 cut(s) 5, 41
CviKI_1 RGCY 2 cut(s) 5, 41
DdeI CTNAG 2 cut(s) 9, 42
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DraI TTTAAA 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 46, 61
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 136
FatI CATG 1 cut(s) 132
FblI GTMKAC 1 cut(s) 213
FokI GGATG 1 cut(s) 200
FspBI CTAG 1 cut(s) 102
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 2 cut(s) 18, 262
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 44, 122
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 24, 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 2 cut(s) 9, 42
Hsp92II CATG 1 cut(s) 136
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 5 cut(s) 29, 63, 135, 228, 255
LweI GCATC 1 cut(s) 216
MabI ACCWGGT 1 cut(s) 241
MaeI CTAG 1 cut(s) 102
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MflI RGATCY 1 cut(s) 118
MluCI AATT 2 cut(s) 158, 233
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 2 cut(s) 118, 188
Mph1103I ATGCAT 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 243
MssI GTTTAAAC 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 48, 120
NsiI ATGCAT 1 cut(s) 134
NspI RCATGY 1 cut(s) 136
PaeI GCATGC 1 cut(s) 136
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 262
PleI GAGTC 1 cut(s) 26
PmeI GTTTAAAC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 48, 120
PspPI GGNCC 2 cut(s) 46, 61
PspPPI RGGWCCY 1 cut(s) 46
PsuI RGATCY 1 cut(s) 118
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 46, 61
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 243
SetI ASST 5 cut(s) 43, 66, 116, 180, 247
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 2 cut(s) 46, 61
SphI GCATGC 1 cut(s) 136
Sse9I AATT 2 cut(s) 158, 233
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 56
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 114
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 158, 233
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 204, 226
TspRI CASTG 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 46, 61
XapI RAATTY 2 cut(s) 158, 233
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.