Prupe.8G205500_v2.0.a1

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000415
Physical Location & Seq
Forward (+)
19235192 .. 19237435
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G205500.1

Sequence Viewer

Length: 480 bp
ATGAATCAAGAATTCACAAGAAAGAAAGTCAAAACCTATGCAAACATATGTGATATTTGTCACCAATATAATGAAGCCGTGTTGCATAATAAATTCTGGGGCCAAAGATGTTGTGTGGAACATTACAAAGATGGGACTCTGAGGTGTAGCACTTGCCACAGATTGAAGCAACCAGAAATAAAATATGTGGATCTTGGCAACGGGCGAAAACTTTGCTCAGACTGCTATTCTATTACTATCATGGATCCAGAGGAATGCGAGGCCCATCTTTTTGAAAACGTGCGTACATTTTATACAGGTTTAAATCTCAATTTGGATGAAGACATTCCTATTTCATTGGTGGATAAAGATGAGATGAGCAGAGTTCACAAAAGAAATTATGAGATGCGTCGACACATAATTGGCTTAGCCACCAGTATCTGGAATTTCAAGCCTGTCGTGACGATTAATAGATGTTCAAAATATGGAAGACAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

160

Amino Acids

18.8

Weight (kDa)

8.51

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 420
AccI GTMKAC 1 cut(s) 391
AclWI GGATC 3 cut(s) 198, 239, 252
AcsI RAATTY 3 cut(s) 11, 92, 424
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 4 cut(s) 166, 275, 430, 459
AlwI GGATC 3 cut(s) 198, 239, 252
AlwNI CAGNNNCTG 1 cut(s) 420
AoxI GGCC 2 cut(s) 100, 261
ApoI RAATTY 3 cut(s) 11, 92, 424
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 100, 262
AsuHPI GGTGA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 244
BbsI GAAGAC 2 cut(s) 327, 475
BccI CCATC 2 cut(s) 125, 273
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BlpI GCTNAGC 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 100, 262
BmiI GGNNCC 2 cut(s) 101, 246
BmsI GCATC 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 327, 475
Bpu1102I GCTNAGC 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 414
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 131, 231
BseNI ACTGG 1 cut(s) 414
BshFI GGCC 2 cut(s) 102, 263
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 2 cut(s) 102, 263
Bsp143I GATC 2 cut(s) 190, 244
Bsp1720I GCTNAGC 1 cut(s) 406
BspANI GGCC 2 cut(s) 102, 263
BspCNI CTCAG 2 cut(s) 132, 230
BspLI GGNNCC 2 cut(s) 101, 246
BspPI GGATC 3 cut(s) 198, 239, 252
BsrI ACTGG 1 cut(s) 414
BssMI GATC 2 cut(s) 190, 244
BstDEI CTNAG 3 cut(s) 140, 217, 406
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 2 cut(s) 193, 247
BstMBI GATC 2 cut(s) 190, 244
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstV2I GAAGAC 2 cut(s) 327, 475
BstX2I RGATCY 2 cut(s) 190, 244
BstYI RGATCY 2 cut(s) 190, 244
BsuRI GGCC 2 cut(s) 102, 263
BtsCI GGATG 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 100, 262
CseI GACGC 1 cut(s) 377
Csp6I GTAC 1 cut(s) 285
CviAII CATG 1 cut(s) 241
CviJI RGCY 6 cut(s) 77, 102, 263, 405, 410, 433
CviKI_1 RGCY 6 cut(s) 77, 102, 263, 405, 410, 433
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 3 cut(s) 140, 217, 406
DpnI GATC 2 cut(s) 192, 246
DpnII GATC 2 cut(s) 190, 244
DraI TTTAAA 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 11
FaeI CATG 1 cut(s) 244
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 240
FauNDI CATATG 1 cut(s) 47
FblI GTMKAC 1 cut(s) 391
FokI GGATG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 102, 263
HgaI GACGC 1 cut(s) 377
Hin1II CATG 1 cut(s) 244
HincII GTYRAC 1 cut(s) 392
HindII GTYRAC 1 cut(s) 392
HinfI GANTC 2 cut(s) 4, 136
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 367, 392
Hpy188I TCNGA 2 cut(s) 141, 220
Hpy188III TCNNGA 4 cut(s) 8, 248, 421, 439
Hpy8I GTNNAC 2 cut(s) 367, 392
Hpy99I CGWCG 1 cut(s) 393
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 41, 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 3 cut(s) 140, 217, 406
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 244
Kzo9I GATC 2 cut(s) 190, 244
LpnPI CCDG 7 cut(s) 82, 186, 261, 282, 406, 427, 447
LweI GCATC 1 cut(s) 375
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 59, 439
MalI GATC 2 cut(s) 192, 246
MboI GATC 2 cut(s) 190, 244
MboII GAAGA 2 cut(s) 332, 480
MflI RGATCY 2 cut(s) 190, 244
MluCI AATT 7 cut(s) 11, 92, 310, 376, 399, 424, 475
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 3 cut(s) 135, 244, 253
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 2 cut(s) 302, 447
Mva1269I GAATGC 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeI CATATG 1 cut(s) 47
NdeII GATC 2 cut(s) 190, 244
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 101, 246
NmuCI GTSAC 2 cut(s) 59, 439
PctI GAATGC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 420
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PshBI ATTAAT 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 101, 246
PspPI GGNCC 2 cut(s) 100, 262
PstNI CAGNNNCTG 1 cut(s) 420
PsuI RGATCY 2 cut(s) 190, 244
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SalI GTCGAC 1 cut(s) 390
SaqAI TTAA 2 cut(s) 302, 447
Sau3AI GATC 2 cut(s) 190, 244
Sau96I GGNCC 2 cut(s) 100, 262
SchI GAGTC 1 cut(s) 130
SetI ASST 4 cut(s) 38, 146, 282, 301
SfaNI GCATC 1 cut(s) 375
Sse9I AATT 7 cut(s) 11, 92, 310, 376, 399, 424, 475
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 391
TasI AATT 7 cut(s) 11, 92, 310, 376, 399, 424, 475
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 302, 447
Tru9I TTAA 2 cut(s) 302, 447
TseFI GTSAC 2 cut(s) 59, 439
Tsp45I GTSAC 2 cut(s) 59, 439
TspDTI ATGAA 4 cut(s) 17, 87, 324, 333
Van91I CCANNNNNTGG 1 cut(s) 420
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 3 cut(s) 11, 92, 424
XmiI GTMKAC 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.