RLG00000001989

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000415
Physical Location & Seq
Reverse (-)
24005633 .. 24006244
612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001989

Sequence Viewer

Length: 498 bp
ATGGGAGCAATCTTGGCACATGAGATGATGCATGCATGGTTCCGCCTTCAAGGTATGCCATGGGGATGTGAAAGTAGCACTGAAGAAGGTATTTGCCAAGTAATGTCTTACAAATGGTTGCAGTGGTTTTCTTCCAGTGGTCTTGATACCTCGCACAAAACCAATCAGCAAGTTCAATATACAAGAAAGCTGAAAGAGTTATTAGTAGAAGAAATTCGGTCTCAAGGAGACGAAGTTTATGTCCAAGGATTCAGAGATGCTATGCGCGCTATTGAAACATTTGGCTTTAAAACCACACTAGACCATGCCGTTAAAAATGGGACTCTACCACTACCTATGATGGATAATACACGCTCCACCGCCGCAGCCGCCGCCGCCACCACCACCACCACCACCAAGTTAGTAAGAAAGAAAACCAGTGCTACCCCAATAACTCATTATGGAAGGCGACCGGCAATACAACCAAATCATTATGGAAGGCCACAGCTGCCGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

166

Amino Acids

18.63

Weight (kDa)

9.36

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 2 - 103 8.8e-26 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 7 cut(s) 43, 360, 363, 369, 372, 375, 491
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 102
AgsI TTSAA 3 cut(s) 50, 176, 275
AluBI AGCT 2 cut(s) 190, 487
AluI AGCT 2 cut(s) 190, 487
Alw26I GTCTC 2 cut(s) 222, 225
AoxI GGCC 1 cut(s) 479
ApeKI GCWGC 2 cut(s) 365, 487
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 2 cut(s) 267, 269
BbvI GCAGC 2 cut(s) 377, 474
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 293
BcoDI GTCTC 2 cut(s) 222, 225
BfaI CTAG 1 cut(s) 299
BisI GCNGC 7 cut(s) 363, 366, 369, 372, 375, 488, 491
BlsI GCNGC 7 cut(s) 364, 367, 370, 373, 376, 489, 492
BmiI GGNNCC 1 cut(s) 41
BmsI GCATC 2 cut(s) 18, 247
BpuEI CTTGAG 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 59, 244
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 2 cut(s) 135, 417
BseDI CCNNGG 2 cut(s) 59, 244
BseGI GGATG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 135, 417
BsePI GCGCGC 1 cut(s) 265
BseXI GCAGC 2 cut(s) 377, 474
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 1 cut(s) 481
BsiEI CGRYCG 1 cut(s) 452
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 222, 225
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 334
BsnI GGCC 1 cut(s) 481
Bso31I GGTCTC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 7 cut(s) 43, 360, 363, 369, 372, 375, 491
BspANI GGCC 1 cut(s) 481
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 2 cut(s) 135, 417
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 59, 244
BssHII GCGCGC 1 cut(s) 265
BssT1I CCWWGG 2 cut(s) 59, 244
BstC8I GCNNGC 2 cut(s) 33, 267
BstDSI CCRYGG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 71
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 2 cut(s) 267, 269
BstMAI GTCTC 2 cut(s) 222, 225
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 6 cut(s) 14, 266, 368, 371, 374, 487
BstNSI RCATGY 1 cut(s) 35
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 377, 474
BsuRI GGCC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 71
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 4 cut(s) 78, 128, 142, 424
Cac8I GCNNGC 2 cut(s) 33, 267
CfoI GCGC 2 cut(s) 267, 269
Cfr10I RCCGGY 1 cut(s) 451
CviAII CATG 5 cut(s) 20, 32, 36, 60, 305
CviJI RGCY 5 cut(s) 190, 285, 368, 481, 487
CviKI_1 RGCY 5 cut(s) 190, 285, 368, 481, 487
DraI TTTAAA 1 cut(s) 289
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 59, 244
Eco31I GGTCTC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 102
EcoT14I CCWWGG 2 cut(s) 59, 244
EcoT22I ATGCAT 2 cut(s) 33, 37
ErhI CCWWGG 2 cut(s) 59, 244
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 5 cut(s) 23, 35, 39, 63, 308
FaqI GGGAC 1 cut(s) 334
FatI CATG 5 cut(s) 19, 31, 35, 59, 304
Fnu4HI GCNGC 7 cut(s) 363, 366, 369, 372, 375, 488, 491
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 7 cut(s) 363, 366, 369, 372, 375, 488, 491
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 266, 268
GluI GCNGC 7 cut(s) 363, 366, 369, 372, 375, 488, 491
HaeIII GGCC 1 cut(s) 481
HapII CCGG 1 cut(s) 452
HhaI GCGC 2 cut(s) 267, 269
Hin1II CATG 5 cut(s) 23, 35, 39, 63, 308
Hin6I GCGC 2 cut(s) 265, 267
HinP1I GCGC 2 cut(s) 265, 267
HinfI GANTC 2 cut(s) 249, 322
HpaII CCGG 1 cut(s) 452
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 56, 80, 438, 471
HpyCH4V TGCA 3 cut(s) 31, 35, 121
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 266, 368, 371, 374, 487
Hsp92II CATG 5 cut(s) 23, 35, 39, 63, 308
HspAI GCGC 2 cut(s) 265, 267
LmnI GCTCC 2 cut(s) 5, 359
LpnPI CCDG 3 cut(s) 148, 430, 465
Lsp1109I GCAGC 2 cut(s) 377, 474
LweI GCATC 2 cut(s) 18, 247
MaeI CTAG 1 cut(s) 299
MboII GAAGA 3 cut(s) 95, 123, 221
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 1 cut(s) 160
Mph1103I ATGCAT 2 cut(s) 33, 37
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 2 cut(s) 288, 312
MslI CAYNNNNRTG 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 1 cut(s) 452
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 6 cut(s) 14, 266, 368, 371, 374, 487
NcoI CCATGG 1 cut(s) 59
NlaIII CATG 5 cut(s) 23, 35, 39, 63, 308
NlaIV GGNNCC 1 cut(s) 41
NsiI ATGCAT 2 cut(s) 33, 37
NspI RCATGY 1 cut(s) 35
PaeI GCATGC 1 cut(s) 35
PauI GCGCGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 7 cut(s) 364, 367, 370, 373, 376, 489, 492
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 41
PteI GCGCGC 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 2 cut(s) 288, 312
SatI GCNGC 7 cut(s) 363, 366, 369, 372, 375, 488, 491
SchI GAGTC 1 cut(s) 316
SetI ASST 6 cut(s) 55, 91, 152, 192, 337, 489
SfaNI GCATC 2 cut(s) 18, 247
SmiMI CAYNNNNRTG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SphI GCATGC 1 cut(s) 35
Sse9I AATT 1 cut(s) 213
SsiI CCGC 7 cut(s) 43, 360, 363, 369, 372, 375, 491
SspMI CTAG 1 cut(s) 299
StyI CCWWGG 2 cut(s) 59, 244
TaqII GACCGA 1 cut(s) 207
TasI AATT 1 cut(s) 213
TauI GCSGC 5 cut(s) 365, 371, 374, 377, 493
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 288, 312
Tru9I TTAA 2 cut(s) 288, 312
TscAI CASTG 4 cut(s) 85, 128, 142, 424
TseI GCWGC 2 cut(s) 365, 487
TspRI CASTG 4 cut(s) 85, 128, 142, 424
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 2 cut(s) 33, 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.