RLG00000003825

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000415
Physical Location & Seq
Reverse (-)
53195470 .. 53196534
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003825

Sequence Viewer

Length: 366 bp
ATGTGTTTGAATTCTTCAGAAGCTTCAATCTTCAAGATCGCAATCGTACTTTTGTCTGGAAAACCGGATGTTGAAATGGGAGGAATTTTGGCACATGAGATGGTGCATGCATGGTTGTACCTTCAAGCAGGCCATGGAAATGGGAAAGAAGCGTTGAAGAAGGGAGACGAATTAGTTTATGGTCAAGGATTTATAAACGCTATGCGTGCTATTGAAACATTTGGGTTCAAGACTACGCTGGATCATACTGTTAAGAATGGAACTCTGCCGGTGGTTCCACCGCCAGTAGTGATGAGGAAGAAAACCACCGCCATCCCCACTGATCGAGTCAATGAGGAAGAAGACCACTTCAGCTCCAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

122

Amino Acids

13.22

Weight (kDa)

6.18

Isoelectric Point (pI)

24.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 14 - 43 1.3e-07 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AciI CCGC 2 cut(s) 281, 309
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 2 cut(s) 10, 84
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 2 cut(s) 48, 119
AgsI TTSAA 8 cut(s) 10, 27, 34, 74, 125, 157, 215, 229
AluBI AGCT 2 cut(s) 23, 354
AluI AGCT 2 cut(s) 23, 354
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 249
AoxI GGCC 1 cut(s) 130
ApoI RAATTY 2 cut(s) 10, 84
BbsI GAAGAC 1 cut(s) 348
BccI CCATC 2 cut(s) 94, 320
BcoDI GTCTC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 1 cut(s) 338
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 73, 312
BseJI GATNNNNATC 1 cut(s) 41
BseNI ACTGG 1 cut(s) 284
BshFI GGCC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 65, 269
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 36, 241, 322
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 2 cut(s) 281, 309
BspANI GGCC 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 36, 241, 322
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 250
BstC8I GCNNGC 3 cut(s) 108, 130, 207
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 73, 312
BstKTI GATC 3 cut(s) 39, 244, 325
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 36, 241, 322
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 348
BstXI CCANNNNNNTGG 1 cut(s) 140
BsuRI GGCC 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 2 cut(s) 73, 312
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 3 cut(s) 108, 130, 207
Cfr10I RCCGGY 1 cut(s) 268
Csp6I GTAC 2 cut(s) 47, 118
CviAII CATG 4 cut(s) 95, 107, 111, 134
CviJI RGCY 3 cut(s) 23, 132, 354
CviKI_1 RGCY 3 cut(s) 23, 132, 354
CviQI GTAC 2 cut(s) 47, 118
DpnI GATC 3 cut(s) 38, 243, 324
DpnII GATC 3 cut(s) 36, 241, 322
Eco130I CCWWGG 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 133
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 4 cut(s) 98, 110, 114, 137
FaiI YATR 8 cut(s) 96, 108, 112, 135, 180, 194, 203, 246
FatI CATG 4 cut(s) 94, 106, 110, 133
FokI GGATG 2 cut(s) 80, 299
HaeIII GGCC 1 cut(s) 132
HapII CCGG 2 cut(s) 65, 269
Hin1II CATG 4 cut(s) 98, 110, 114, 137
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 1 cut(s) 327
HpaII CCGG 2 cut(s) 65, 269
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 3 cut(s) 34, 57, 229
HpyAV CCTTC 2 cut(s) 131, 154
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 106, 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 4 cut(s) 98, 110, 114, 137
Kzo9I GATC 3 cut(s) 36, 241, 322
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 6 cut(s) 42, 78, 114, 224, 282, 297
MalI GATC 3 cut(s) 38, 243, 324
MboI GATC 3 cut(s) 36, 241, 322
MboII GAAGA 6 cut(s) 6, 22, 169, 310, 350, 353
MluCI AATT 3 cut(s) 10, 84, 170
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 3 cut(s) 74, 288, 328
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 2 cut(s) 65, 269
MwoI GCNNNNNNNGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 133
NdeII GATC 3 cut(s) 36, 241, 322
NlaIII CATG 4 cut(s) 98, 110, 114, 137
NlaIV GGNNCC 1 cut(s) 276
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PsiI TTATAA 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 276
RsaI GTAC 2 cut(s) 48, 119
RsaNI GTAC 2 cut(s) 47, 118
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 3 cut(s) 36, 241, 322
SchI GAGTC 1 cut(s) 336
SetI ASST 3 cut(s) 25, 123, 356
SmiMI CAYNNNNRTG 1 cut(s) 138
SphI GCATGC 1 cut(s) 110
Sse9I AATT 3 cut(s) 10, 84, 170
SsiI CCGC 2 cut(s) 281, 309
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 325
TasI AATT 3 cut(s) 10, 84, 170
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 325
TspRI CASTG 1 cut(s) 325
XapI RAATTY 2 cut(s) 10, 84
XceI RCATGY 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.