FvH4_5g06730

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000415
Physical Location & Seq
Reverse (-)
3966936 .. 3968883
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06730.t1

Sequence Viewer

Length: 1107 bp
ATGCATGATACGAGTACAGCAGATTCCAATGATGTACCATGGTCATCTTACTGTCATACTTGTTACAGATTCAAGGAGGCTGGAGACACTGGATTTTTGAACCTTGGTGATGACCGGCAACTTTGCTCAGATTGTTCTTCAATAGCAATCTCTCGTGGAGATCGAGAGGGATGCAGTTTCATAATCCAAAAGGTGTATGAGTTCTTTAAAAGCTCCAATCTTCAAGTGAATGAAGACATTCCTATTGTATTCGTCGACAACAATCAGATGCGCAGACTATGTGAGGGTAAAACAGAAGCATATACGAGAAGTGGAGTAAATATTGCAAAATCTATGAAGTTCTTCTTAGGAGACATGATCTTTGTTCTGTTTGGAAAACCAGATGTGGATATGGGAGGACTACTGGCACATGAAATCATGCACGGATGGTTTTTATCTCAAGGTTATAATCCATTGGAACATGAAAAAAGCGTTGACGAAGGTATTTGCCAAGTAATGTCTCACAAATGGTTGGATTGGTTTTCTTCTGAAGGTTTTAACTCTTCGCGAAAGACCAAGGAGCAAGTTCAATATACAAGAAAGTTGAAAGAGAAGTTGGCATTGGGACTGAATGAATGGTATGATGACGAAGTTTATGGTCAAGGATTCAGAAATGCTATGCGTGCTATTAAAACATCTGGATTTGAAGCTACGTTGGATCATACCCTTAAAGAAGGAACTCTCCCACCGGTAGAGACGACAACCATGAGGAAGGAGACCGCCTCCGCCGCAATAACTGATCAGTTGTTATGTAAAGAAGGAACTCTCCCGCCAGGAGTTACGACAACCATGAGGAAGAAGACCGCCTCTGCCGCTATAACTGAGTTGTTATGGAAGGCTGCTGGAAGCAAAACTGAATCACTATGGAAGGCCACCACCGTTACGATTACCAACTTACTATTGAAAGCCACGGGCGCCATATGCGAAACACCGCGATTTGTTGCTATGGAAGGCCAGCGCCACCACCATTATCATCATGGACAAAGCCATAACAACTTACATGCTTCCATGTCCGCGTCTCCTACTCTCCTTATTATGTTTTTTGGTATATTGATTGAACACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

369

Amino Acids

41.35

Weight (kDa)

6.43

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 120 - 235 6.8e-25 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
Acc16I TGCGCA 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 953
AccI GTMKAC 1 cut(s) 255
AccII CGCG 3 cut(s) 547, 973, 1055
AciI CCGC 8 cut(s) 759, 765, 768, 809, 843, 852, 971, 1053
AclWI GGATC 1 cut(s) 705
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 954
AfaI GTAC 2 cut(s) 16, 36
AgeI ACCGGT 1 cut(s) 727
AgsI TTSAA 9 cut(s) 73, 100, 141, 224, 569, 586, 686, 943, 1097
AjnI CCWGG 1 cut(s) 811
AjuI GAANNNNNNNTTGG 4 cut(s) 578, 584, 610, 616
AluBI AGCT 2 cut(s) 213, 689
AluI AGCT 2 cut(s) 213, 689
Alw26I GTCTC 6 cut(s) 78, 345, 504, 728, 749, 1062
AlwI GGATC 1 cut(s) 705
AoxI GGCC 2 cut(s) 909, 991
ApeKI GCWGC 1 cut(s) 878
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AsiGI ACCGGT 1 cut(s) 727
Asp700I GAANNNNTTC 2 cut(s) 237, 341
AspLEI GCGC 3 cut(s) 273, 956, 999
AsuHPI GGTGA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 953
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 240, 845
BbvI GCAGC 1 cut(s) 865
BccI CCATC 1 cut(s) 420
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciT130I CCWGG 1 cut(s) 813
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 6 cut(s) 78, 345, 504, 728, 749, 1062
BfoI RGCGCY 2 cut(s) 957, 1000
BisI GCNGC 3 cut(s) 768, 852, 879
BlsI GCNGC 3 cut(s) 769, 853, 880
Bme1390I CCNGG 1 cut(s) 813
BmiI GGNNCC 1 cut(s) 955
BmrFI CCNGG 1 cut(s) 813
BmsI GCATC 2 cut(s) 161, 258
BpiI GAAGAC 2 cut(s) 240, 845
BplI GAGNNNNNCTC 2 cut(s) 746, 778
BpmI CTGGAG 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 4 cut(s) 38, 103, 555, 948
BsaWI WCCGGW 1 cut(s) 727
Bse118I RCCGGY 2 cut(s) 114, 727
Bse1I ACTGG 2 cut(s) 94, 408
BseBI CCWGG 1 cut(s) 813
BseDI CCNNGG 4 cut(s) 38, 103, 555, 948
BseGI GGATG 2 cut(s) 176, 431
BseMII CTCAG 2 cut(s) 141, 852
BseNI ACTGG 2 cut(s) 94, 408
BseXI GCAGC 1 cut(s) 865
Bsh1236I CGCG 3 cut(s) 547, 973, 1055
BshFI GGCC 2 cut(s) 911, 993
BshNI GGYRCC 1 cut(s) 953
BshTI ACCGGT 1 cut(s) 727
BsiSI CCGG 2 cut(s) 115, 728
BslFI GGGAC 1 cut(s) 618
BsmAI GTCTC 6 cut(s) 78, 345, 504, 728, 749, 1062
BsmBI CGTCTC 2 cut(s) 728, 1062
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 2 cut(s) 911, 993
Bso31I GGTCTC 1 cut(s) 749
Bsp143I GATC 4 cut(s) 160, 357, 697, 778
Bsp19I CCATGG 1 cut(s) 38
Bsp68I TCGCGA 1 cut(s) 547
BspACI CCGC 8 cut(s) 759, 765, 768, 809, 843, 852, 971, 1053
BspANI GGCC 2 cut(s) 911, 993
BspCNI CTCAG 2 cut(s) 140, 853
BspFNI CGCG 3 cut(s) 547, 973, 1055
BspLI GGNNCC 1 cut(s) 955
BspPI GGATC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 953
BspTNI GGTCTC 1 cut(s) 749
BsrFI RCCGGY 2 cut(s) 114, 727
BsrI ACTGG 2 cut(s) 94, 408
BssAI RCCGGY 2 cut(s) 114, 727
BssECI CCNNGG 4 cut(s) 38, 103, 555, 948
BssMI GATC 4 cut(s) 160, 357, 697, 778
BssNI GRCGYC 1 cut(s) 954
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 3 cut(s) 38, 103, 555
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 813
Bst4CI ACNGT 2 cut(s) 53, 919
Bst6I CTCTTC 1 cut(s) 547
BstACI GRCGYC 1 cut(s) 954
BstC8I GCNNGC 2 cut(s) 663, 995
BstDEI CTNAG 3 cut(s) 127, 346, 861
BstDSI CCRYGG 2 cut(s) 38, 948
BstF5I GGATG 2 cut(s) 176, 431
BstFNI CGCG 3 cut(s) 547, 973, 1055
BstH2I RGCGCY 2 cut(s) 957, 1000
BstHHI GCGC 3 cut(s) 273, 956, 999
BstKTI GATC 4 cut(s) 163, 360, 700, 781
BstMAI GTCTC 6 cut(s) 78, 345, 504, 728, 749, 1062
BstMBI GATC 4 cut(s) 160, 357, 697, 778
BstMWI GCNNNNNNNGC 5 cut(s) 662, 767, 851, 953, 960
BstNI CCWGG 1 cut(s) 813
BstNSI RCATGY 1 cut(s) 1043
BstSCI CCNGG 1 cut(s) 811
BstUI CGCG 3 cut(s) 547, 973, 1055
BstV1I GCAGC 1 cut(s) 865
BstV2I GAAGAC 2 cut(s) 240, 845
BsuRI GGCC 2 cut(s) 911, 993
BtgI CCRYGG 2 cut(s) 38, 948
BtsCI GGATG 2 cut(s) 176, 431
BtsIMutI CAGTG 1 cut(s) 87
BtuMI TCGCGA 1 cut(s) 547
Cac8I GCNNGC 2 cut(s) 663, 995
CfoI GCGC 3 cut(s) 273, 956, 999
Cfr10I RCCGGY 2 cut(s) 114, 727
CseI GACGC 1 cut(s) 1044
Csp6I GTAC 2 cut(s) 15, 35
CspAI ACCGGT 1 cut(s) 727
CviJI RGCY 8 cut(s) 80, 213, 689, 878, 911, 947, 993, 1026
CviKI_1 RGCY 8 cut(s) 80, 213, 689, 878, 911, 947, 993, 1026
CviQI GTAC 2 cut(s) 15, 35
DdeI CTNAG 3 cut(s) 127, 346, 861
DinI GGCGCC 1 cut(s) 955
DpnI GATC 4 cut(s) 162, 359, 699, 780
DpnII GATC 4 cut(s) 160, 357, 697, 778
DraI TTTAAA 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
EciI GGCGGA 1 cut(s) 754
Eco130I CCWWGG 3 cut(s) 38, 103, 555
Eco31I GGTCTC 1 cut(s) 749
Eco57I CTGAAG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 811
EcoT14I CCWWGG 3 cut(s) 38, 103, 555
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 955
EheI GGCGCC 1 cut(s) 955
ErhI CCWWGG 3 cut(s) 38, 103, 555
Esp3I CGTCTC 2 cut(s) 728, 1062
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 618
FauI CCCGC 1 cut(s) 816
FauNDI CATATG 1 cut(s) 959
FbaI TGATCA 1 cut(s) 778
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 768, 852, 879
FokI GGATG 2 cut(s) 183, 438
Fsp4HI GCNGC 3 cut(s) 768, 852, 879
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 3 cut(s) 272, 955, 998
GluI GCNGC 3 cut(s) 768, 852, 879
GsuI CTGGAG 1 cut(s) 102
HaeII RGCGCY 2 cut(s) 957, 1000
HaeIII GGCC 2 cut(s) 911, 993
HapII CCGG 2 cut(s) 115, 728
HgaI GACGC 1 cut(s) 1044
HhaI GCGC 3 cut(s) 273, 956, 999
Hin1I GRCGYC 1 cut(s) 954
Hin6I GCGC 3 cut(s) 271, 954, 997
HinP1I GCGC 3 cut(s) 271, 954, 997
HincII GTYRAC 2 cut(s) 256, 475
HindII GTYRAC 2 cut(s) 256, 475
HinfI GANTC 4 cut(s) 23, 69, 645, 896
HpaII CCGG 2 cut(s) 115, 728
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 256, 475
Hpy188I TCNGA 4 cut(s) 130, 267, 529, 650
Hpy188III TCNNGA 3 cut(s) 164, 546, 678
Hpy8I GTNNAC 2 cut(s) 256, 475
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 8 cut(s) 473, 524, 707, 745, 791, 868, 901, 983
HpyCH4III ACNGT 2 cut(s) 53, 919
HpyCH4IV ACGT 1 cut(s) 692
HpyCH4V TGCA 4 cut(s) 4, 174, 326, 421
HpyF10VI GCNNNNNNNGC 5 cut(s) 662, 767, 851, 953, 960
HpyF3I CTNAG 3 cut(s) 127, 346, 861
HpySE526I ACGT 1 cut(s) 692
Hsp92I GRCGYC 1 cut(s) 954
HspAI GCGC 3 cut(s) 271, 954, 997
KasI GGCGCC 1 cut(s) 953
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 4 cut(s) 160, 357, 697, 778
LmnI GCTCC 2 cut(s) 218, 559
Lsp1109I GCAGC 1 cut(s) 865
LweI GCATC 2 cut(s) 161, 258
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 3 cut(s) 62, 817, 919
MalI GATC 4 cut(s) 162, 359, 699, 780
MboI GATC 4 cut(s) 160, 357, 697, 778
MboII GAAGA 8 cut(s) 129, 212, 245, 334, 516, 534, 847, 850
Mly113I GGCGCC 1 cut(s) 954
MmeI TCCRAC 2 cut(s) 492, 675
MnlI CCTC 8 cut(s) 70, 160, 277, 389, 741, 772, 825, 856
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 237, 341
MseI TTAA 4 cut(s) 207, 537, 669, 708
MspI CCGG 2 cut(s) 115, 728
MspR9I CCNGG 1 cut(s) 813
MvaI CCWGG 1 cut(s) 813
MvnI CGCG 3 cut(s) 547, 973, 1055
MwoI GCNNNNNNNGC 5 cut(s) 662, 767, 851, 953, 960
NarI GGCGCC 1 cut(s) 954
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 959
NdeII GATC 4 cut(s) 160, 357, 697, 778
NlaIV GGNNCC 1 cut(s) 955
NruI TCGCGA 1 cut(s) 547
NsbI TGCGCA 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 237, 341
PfeI GAWTC 4 cut(s) 23, 69, 645, 896
PinAI ACCGGT 1 cut(s) 727
PkrI GCNGC 3 cut(s) 769, 853, 880
PluTI GGCGCC 1 cut(s) 957
PsiI TTATAA 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 811
PspGI CCWGG 1 cut(s) 811
PspN4I GGNNCC 1 cut(s) 955
RruI TCGCGA 1 cut(s) 547
RsaI GTAC 2 cut(s) 16, 36
RsaNI GTAC 2 cut(s) 15, 35
SalI GTCGAC 1 cut(s) 254
SaqAI TTAA 4 cut(s) 207, 537, 669, 708
SatI GCNGC 3 cut(s) 768, 852, 879
Sau3AI GATC 4 cut(s) 160, 357, 697, 778
ScrFI CCNGG 1 cut(s) 813
SetI ASST 8 cut(s) 105, 195, 215, 445, 484, 535, 691, 695
SfaNI GCATC 2 cut(s) 161, 258
SfoI GGCGCC 1 cut(s) 955
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SsiI CCGC 8 cut(s) 759, 765, 768, 809, 843, 852, 971, 1053
SspDI GGCGCC 1 cut(s) 953
SspI AATATT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 811
StyI CCWWGG 3 cut(s) 38, 103, 555
TaaI ACNGT 2 cut(s) 53, 919
TaiI ACGT 1 cut(s) 695
TaqI TCGA 2 cut(s) 163, 255
TatI WGTACW 1 cut(s) 14
TauI GCSGC 2 cut(s) 770, 854
TfiI GAWTC 4 cut(s) 23, 69, 645, 896
Tru1I TTAA 4 cut(s) 207, 537, 669, 708
Tru9I TTAA 4 cut(s) 207, 537, 669, 708
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 878
TspDTI ATGAA 6 cut(s) 169, 246, 350, 426, 477, 627
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 1 cut(s) 94
XceI RCATGY 1 cut(s) 1043
XcmI CCANNNNNNNNNTGG 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 2 cut(s) 237, 341
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.