RchiOBHm_Chr2g0160021

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000415
Physical Location & Seq
Reverse (-)
76026878 .. 76027201
324 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52853

Sequence Viewer

Length: 324 bp
ATGATGCATGCATGGTTGCACCTTCAAGATTGTAGGAAAAAATTGGAAGAAAAGGTTGAAGAAGGGATTTGTGAAGTGATGTGCCACAAGTGGATGGAAAGGTTCTGTTCCAGTGATGATCTTGATCACTCCTCATACAAAACCTATAAGCAGGGCCAGTTTAAGAGAAAATTGAAACAACTTCTGGTAGAATCAATGGAAACCCGGCCAGACATTTATGGCCAAGGATACAGAGAGGCTACTAGGGCAATTGAAAAGTTTGGCTTCCAAACGACTCTAAACCATATTGTTCAAAAAGAAAGTTTCCCTCACCGCGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

107

Amino Acids

12.91

Weight (kDa)

8.34

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 1 - 97 9.2e-21 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 315
AciI CCGC 1 cut(s) 313
AcoI YGGCCR 2 cut(s) 206, 220
AgsI TTSAA 5 cut(s) 26, 59, 175, 254, 293
AoxI GGCC 3 cut(s) 154, 206, 220
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 302
BalI TGGCCA 1 cut(s) 222
BccI CCATC 1 cut(s) 88
BciVI GTATCC 1 cut(s) 221
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 1 cut(s) 205
BfaI CTAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 111, 157
Bse8I GATNNNNATC 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 123
BseNI ACTGG 2 cut(s) 111, 157
BseRI GAGGAG 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 156, 208, 222
BsiSI CCGG 1 cut(s) 205
BsnI GGCC 3 cut(s) 156, 208, 222
Bsp143I GATC 2 cut(s) 118, 124
BspACI CCGC 1 cut(s) 313
BspANI GGCC 3 cut(s) 156, 208, 222
BspFNI CGCG 1 cut(s) 315
BsrI ACTGG 2 cut(s) 111, 157
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 118, 124
BssT1I CCWWGG 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 9
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 315
BstKTI GATC 2 cut(s) 121, 127
BstMBI GATC 2 cut(s) 118, 124
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 203
BstUI CGCG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 3 cut(s) 156, 208, 222
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 154
CviAII CATG 2 cut(s) 8, 12
CviJI RGCY 5 cut(s) 156, 208, 222, 239, 264
CviKI_1 RGCY 5 cut(s) 156, 208, 222, 239, 264
DpnI GATC 2 cut(s) 120, 126
DpnII GATC 2 cut(s) 118, 124
EaeI YGGCCR 2 cut(s) 206, 220
Eco130I CCWWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 223
EcoT22I ATGCAT 2 cut(s) 9, 13
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 11, 15
FaiI YATR 6 cut(s) 9, 13, 136, 147, 219, 285
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 2 cut(s) 7, 11
FbaI TGATCA 1 cut(s) 124
FokI GGATG 1 cut(s) 106
FspBI CTAG 1 cut(s) 243
HaeIII GGCC 3 cut(s) 156, 208, 222
HapII CCGG 1 cut(s) 205
Hin1II CATG 2 cut(s) 11, 15
HinfI GANTC 2 cut(s) 191, 274
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 302
Hpy188III TCNNGA 2 cut(s) 26, 122
HpyAV CCTTC 2 cut(s) 32, 56
HpyCH4V TGCA 3 cut(s) 7, 11, 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Hsp92II CATG 2 cut(s) 11, 15
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 118, 124
LpnPI CCDG 6 cut(s) 124, 137, 170, 170, 218, 222
MaeI CTAG 1 cut(s) 243
MalI GATC 2 cut(s) 120, 126
MboI GATC 2 cut(s) 118, 124
MboII GAAGA 2 cut(s) 59, 71
MfeI CAATTG 1 cut(s) 249
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 3 cut(s) 41, 170, 249
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 3 cut(s) 142, 229, 318
Mox20I TGGCCA 1 cut(s) 222
Mph1103I ATGCAT 2 cut(s) 9, 13
MscI TGGCCA 1 cut(s) 222
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 222
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 205
MunI CAATTG 1 cut(s) 249
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 205
NdeII GATC 2 cut(s) 118, 124
NlaIII CATG 2 cut(s) 11, 15
NsiI ATGCAT 2 cut(s) 9, 13
NspI RCATGY 1 cut(s) 11
PaeI GCATGC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 191
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 2 cut(s) 118, 124
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 205
SetI ASST 4 cut(s) 24, 57, 104, 146
SphI GCATGC 1 cut(s) 11
Sse9I AATT 3 cut(s) 41, 170, 249
SsiI CCGC 1 cut(s) 313
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 223
TasI AATT 3 cut(s) 41, 170, 249
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 118
TspRI CASTG 1 cut(s) 118
XceI RCATGY 1 cut(s) 11
XspI CTAG 1 cut(s) 243
Zsp2I ATGCAT 2 cut(s) 9, 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.