Rh6CG265100

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000415
Physical Location & Seq
Forward (+)
43822448 .. 43825005
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG265100.1

Sequence Viewer

Length: 927 bp
ATGAATATTTGTTACGTTCGCAAAAAACATTCTAACTCATTGGCTCAGGATAAATTTTGGGACCAAAGATGCTGTTCTGGACATTACTTTGACGGAACTCTGAATTGTATCACTTGTCATAAATTTAAGCAAGCCGGGGAGATAGAATACTTGAACCTTGGTCGTGGTCTAATGACTTGTTCAAAATGCTGTTCTATTGCTATTAAGAATTCAGAAGAATTCAAGCCAATTATTGAAAATGTGCATAATTTTTATGACAGTTTAAATCTGAAGGTTGATCGAGACATCCCCATTTTGTTGGTCGATGGTAATGAGATGTTCGGATCTAAACAAGGCAGAATCCATCTCGGTTCTACTTGCTATTGTATCGAAAGGGGAAAATTTTCAGAAGATTTAACCATGTTGCAAGATTTAGCAACCTGTCTCTCGGGCAAATTGAGAATTTCAGTTTTGTCTGGACTACCAGATATAGCCATGGGAGGAACTTTAGCACATGAGATGATGCATGCTTGGTTGAAACTTCAAGGTTGTAAGCCGTGGGAATGGGAAAGAAGAGTTGAAGAAGGGATCTGTCAAGTAATGAAGTACAAGTGGATGGAATGGTTTTGTTCTAGTAGTGATTTTGACTCTTGGTACAAAACCAATGAGCAAGCTCAATACGCAAGAAAGTTGAAAGAGTATCAAGTCCAAGTGATGGAGAGGTGGGTAGATAAAGTTTATGGCCAAGGGTTCAGAGATGCTATGAAGGCTGTAGAAATGTTTGGCTTCGAAACCACGCTGCACTACATCGTTGAAAAAGGAAAATTCCCTCGCAGTCAACCACCTCCTGTCCCGATTCCTAGGACACCTAGGGATGAAAGATGGAAGGGGGCTGTATGCGCTGTAGCTCATATAGCTCTTGTTTTTCTTTTAATGAAGGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

308

Amino Acids

35.66

Weight (kDa)

8.54

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 148 - 264 1.8e-29 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 694
AclWI GGATC 2 cut(s) 331, 575
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 7 cut(s) 53, 122, 208, 218, 380, 441, 803
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 2 cut(s) 587, 635
AfiI CCNNNNNNNGG 1 cut(s) 694
AgsI TTSAA 9 cut(s) 154, 183, 223, 236, 517, 524, 560, 673, 794
AluBI AGCT 3 cut(s) 653, 887, 896
AluI AGCT 3 cut(s) 653, 887, 896
Alw26I GTCTC 2 cut(s) 276, 428
AlwI GGATC 2 cut(s) 331, 575
Ama87I CYCGRG 1 cut(s) 427
AoxI GGCC 1 cut(s) 721
ApeKI GCWGC 1 cut(s) 778
ApoI RAATTY 7 cut(s) 53, 122, 208, 218, 380, 441, 803
Asp700I GAANNNNTTC 1 cut(s) 382
AspA2I CCTAGG 2 cut(s) 839, 848
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 768
AvaI CYCGRG 1 cut(s) 427
AvaII GGWCC 1 cut(s) 61
AvrII CCTAGG 2 cut(s) 839, 848
BalI TGGCCA 1 cut(s) 723
BbvI GCAGC 1 cut(s) 765
BccI CCATC 5 cut(s) 299, 351, 589, 688, 855
BceAI ACGGC 1 cut(s) 520
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 276, 428
BfaI CTAG 4 cut(s) 612, 840, 849, 921
BfmI CTRYAG 2 cut(s) 750, 882
BisI GCNGC 1 cut(s) 779
BlnI CCTAGG 2 cut(s) 839, 848
BlsI GCNGC 1 cut(s) 780
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 3 cut(s) 59, 492, 727
Bpu10I CCTNAGC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 768
BpuMI CCSGG 1 cut(s) 136
BsaJI CCNNGG 7 cut(s) 135, 157, 474, 536, 724, 839, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 694
BseDI CCNNGG 7 cut(s) 135, 157, 474, 536, 724, 839, 848
BseGI GGATG 3 cut(s) 285, 600, 859
BseLI CCNNNNNNNGG 1 cut(s) 694
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 765
BsgI GTGCAG 1 cut(s) 764
BshFI GGCC 1 cut(s) 723
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 2 cut(s) 74, 815
BslI CCNNNNNNNGG 1 cut(s) 694
BsmAI GTCTC 2 cut(s) 276, 428
BsmFI GGGAC 2 cut(s) 74, 815
BsnI GGCC 1 cut(s) 723
BsoBI CYCGRG 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 768
Bsp143I GATC 3 cut(s) 277, 323, 567
Bsp19I CCATGG 1 cut(s) 474
BspANI GGCC 1 cut(s) 723
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 2 cut(s) 331, 575
BspT104I TTCGAA 1 cut(s) 768
BssECI CCNNGG 7 cut(s) 135, 157, 474, 536, 724, 839, 848
BssMI GATC 3 cut(s) 277, 323, 567
BssT1I CCWWGG 5 cut(s) 157, 474, 724, 839, 848
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 547
BstBI TTCGAA 1 cut(s) 768
BstC8I GCNNGC 3 cut(s) 132, 507, 651
BstDEI CTNAG 1 cut(s) 45
BstDSI CCRYGG 2 cut(s) 474, 536
BstF5I GGATG 3 cut(s) 285, 600, 859
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 3 cut(s) 280, 326, 570
BstMAI GTCTC 2 cut(s) 276, 428
BstMBI GATC 3 cut(s) 277, 323, 567
BstMWI GCNNNNNNNGC 4 cut(s) 659, 746, 878, 893
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 2 cut(s) 750, 882
BstV1I GCAGC 1 cut(s) 765
BstX2I RGATCY 2 cut(s) 323, 567
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 2 cut(s) 323, 567
BsuRI GGCC 1 cut(s) 723
BtgI CCRYGG 2 cut(s) 474, 536
BtsCI GGATG 3 cut(s) 285, 600, 859
Cac8I GCNNGC 3 cut(s) 132, 507, 651
CfoI GCGC 1 cut(s) 881
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 586, 634
CviAII CATG 4 cut(s) 400, 475, 494, 506
CviQI GTAC 2 cut(s) 586, 634
DdeI CTNAG 1 cut(s) 45
DpnI GATC 3 cut(s) 279, 325, 569
DpnII GATC 3 cut(s) 277, 323, 567
DraI TTTAAA 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
Eco130I CCWWGG 5 cut(s) 157, 474, 724, 839, 848
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 427
EcoRI GAATTC 2 cut(s) 208, 218
EcoT14I CCWWGG 5 cut(s) 157, 474, 724, 839, 848
EcoT22I ATGCAT 1 cut(s) 507
ErhI CCWWGG 5 cut(s) 157, 474, 724, 839, 848
FaeI CATG 4 cut(s) 403, 478, 497, 509
FaqI GGGAC 2 cut(s) 74, 815
FatI CATG 4 cut(s) 399, 474, 493, 505
Fnu4HI GCNGC 1 cut(s) 779
FokI GGATG 3 cut(s) 272, 607, 866
Fsp4HI GCNGC 1 cut(s) 779
FspBI CTAG 4 cut(s) 612, 840, 849, 921
GlaI GCGC 1 cut(s) 880
GluI GCNGC 1 cut(s) 779
HaeIII GGCC 1 cut(s) 723
HapII CCGG 1 cut(s) 135
HhaI GCGC 1 cut(s) 881
Hin1II CATG 4 cut(s) 403, 478, 497, 509
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HincII GTYRAC 1 cut(s) 818
HindII GTYRAC 1 cut(s) 818
HinfI GANTC 3 cut(s) 339, 626, 835
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 818
Hpy188I TCNGA 6 cut(s) 102, 214, 270, 323, 388, 734
Hpy188III TCNNGA 5 cut(s) 47, 78, 281, 456, 832
Hpy8I GTNNAC 1 cut(s) 818
HpyAV CCTTC 5 cut(s) 265, 557, 739, 859, 910
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 244, 406, 505, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 659, 746, 878, 893
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 4 cut(s) 403, 478, 497, 509
HspAI GCGC 1 cut(s) 879
Kzo9I GATC 3 cut(s) 277, 323, 567
LpnPI CCDG 7 cut(s) 32, 63, 148, 433, 441, 477, 840
Lsp1109I GCAGC 1 cut(s) 765
LweI GCATC 3 cut(s) 59, 492, 727
MaeI CTAG 4 cut(s) 612, 840, 849, 921
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 11
MalI GATC 3 cut(s) 279, 325, 569
MboI GATC 3 cut(s) 277, 323, 567
MboII GAAGA 4 cut(s) 227, 401, 564, 572
MflI RGATCY 2 cut(s) 323, 567
MlsI TGGCCA 1 cut(s) 723
MluNI TGGCCA 1 cut(s) 723
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 4 cut(s) 473, 693, 819, 834
Mox20I TGGCCA 1 cut(s) 723
Mph1103I ATGCAT 1 cut(s) 507
MroXI GAANNNNTTC 1 cut(s) 382
MscI TGGCCA 1 cut(s) 723
MseI TTAA 5 cut(s) 126, 204, 263, 395, 911
Msp20I TGGCCA 1 cut(s) 723
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 136
MwoI GCNNNNNNNGC 4 cut(s) 659, 746, 878, 893
NciI CCSGG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 474
NdeII GATC 3 cut(s) 277, 323, 567
NlaIII CATG 4 cut(s) 403, 478, 497, 509
NlaIV GGNNCC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 1 cut(s) 509
NspV TTCGAA 1 cut(s) 768
PaeI GCATGC 1 cut(s) 509
PdmI GAANNNNTTC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 339, 835
PflMI CCANNNNNTGG 1 cut(s) 694
PkrI GCNGC 1 cut(s) 780
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 2 cut(s) 323, 567
RsaI GTAC 2 cut(s) 587, 635
RsaNI GTAC 2 cut(s) 586, 634
SaqAI TTAA 5 cut(s) 126, 204, 263, 395, 911
SatI GCNGC 1 cut(s) 779
Sau3AI GATC 3 cut(s) 277, 323, 567
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 136
SfaNI GCATC 3 cut(s) 59, 492, 727
SfcI CTRYAG 2 cut(s) 750, 882
SfuI TTCGAA 1 cut(s) 768
SinI GGWCC 1 cut(s) 61
SphI GCATGC 1 cut(s) 509
SspI AATATT 1 cut(s) 7
SspMI CTAG 4 cut(s) 612, 840, 849, 921
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 5 cut(s) 157, 474, 724, 839, 848
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 18
TaqI TCGA 4 cut(s) 280, 303, 369, 768
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 2 cut(s) 339, 835
Tru1I TTAA 5 cut(s) 126, 204, 263, 395, 911
Tru9I TTAA 5 cut(s) 126, 204, 263, 395, 911
TseI GCWGC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 17, 596, 758, 870
TspGWI ACGGA 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 7 cut(s) 53, 122, 208, 218, 380, 441, 803
XceI RCATGY 1 cut(s) 509
XmaJI CCTAGG 2 cut(s) 839, 848
XmnI GAANNNNTTC 1 cut(s) 382
XspI CTAG 4 cut(s) 612, 840, 849, 921
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.