Rh6AG270400

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000415
Physical Location & Seq
Reverse (-)
46397749 .. 46399833
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG270400.1

Sequence Viewer

Length: 966 bp
ATGCAGGCTGGACTGGTGCGTCGATCATTCTGGGATCAAAGATGCTGTCGGGAACATTACTCCGATGGTACATTGCGGTGTAGCACTTGTTTCAGATTTAAGAAAGCTGGAGAAACAGAATATTTGAACCTTGGCGATGGACGATATCTTTGCTCATATTGCTCATCTATAGCGGTCTTGAATCGAGAGGAATGCAATGCCATTATTAAAAATGTGTTCAAGTTCTACAGAAGTTTAAATCTCAGAATAGACGAAAGCATTCATATTCTATTCGCCGACAAGAATGAGATGCGCAGAAATAATACATGTAAAGAAGATGCTGATGGTTTATATTTCTCAAGAGGTTATAAGAACCTGTCTATTTTAAGTATTGAATATTTGAAAACTAAAGGAAATATTGAAGTGTTGACGAAAGTCCCAAAGCTCTTAGAAGGAGTCACAATTGTAGTTTTGTTCGGAAAACCAAATGTGGAAATCGGCGGGATCTTGGCACATGAGATGATGCATGTATGGTTACGCCTTCGAGGTAAGCCATGGGAATGGGAAAGAAGAGTTGAAGAAGGCATTTGCGAAGTAATGTATTACAAGTGGTTGAAATGGTTTTGTTCTAGTACTGGATTTCATTCTTCCTACAAAACCAAAGATCATGCTCAATACGCAAGAAAGTTGATAAAGTACTTGGCACAAGAGATTGAGACGCGGGAAGACGAAGTTTATGGCCAAGGGTTCAGAGATGCTATGCTAACGGTTACAAAATTCGGCTTCAAAACTACACTGAACTATACCCTTAAAAATGGAACTCTTCCTGTAGCTCCACCGAAAACCGAGCTATTGTGGAAGGCCACCAGTAGTGGTGCTACATTGTTATTGAAGGCCACTGCCACCACCATAACTGATTTATTATGGAAGTCCACCGGCCGCTGTTATGGAAGGCCATCGCCACCACAACTAGGGCCAAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

321

Amino Acids

37.02

Weight (kDa)

9.27

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 79 - 260 1.9e-32 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AasI GACNNNNNNGTC 1 cut(s) 18
Acc16I TGCGCA 1 cut(s) 293
AccII CGCG 1 cut(s) 700
AciI CCGC 5 cut(s) 76, 173, 480, 700, 919
AclWI GGATC 2 cut(s) 42, 491
AcoI YGGCCR 2 cut(s) 718, 916
AcsI RAATTY 1 cut(s) 755
AfaI GTAC 3 cut(s) 70, 613, 677
AfiI CCNNNNNNNGG 1 cut(s) 950
AflIII ACRYGT 1 cut(s) 305
AluBI AGCT 4 cut(s) 107, 424, 812, 829
AluI AGCT 4 cut(s) 107, 424, 812, 829
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 2 cut(s) 42, 491
AoxI GGCC 6 cut(s) 718, 840, 873, 916, 932, 953
ApoI RAATTY 1 cut(s) 755
ArsI GACNNNNNNTTYG 4 cut(s) 31, 63, 132, 164
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 953
BalI TGGCCA 1 cut(s) 720
BbsI GAAGAC 1 cut(s) 711
BccI CCATC 4 cut(s) 59, 131, 317, 943
BcgI CGANNNNNNTGC 4 cut(s) 132, 166, 174, 208
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 2 cut(s) 609, 950
BfmI CTRYAG 3 cut(s) 168, 226, 807
BisI GCNGC 1 cut(s) 919
BlsI GCNGC 1 cut(s) 920
BmcAI AGTACT 2 cut(s) 613, 677
BmgT120I GGNCC 1 cut(s) 953
BmsI GCATC 5 cut(s) 32, 279, 307, 492, 724
BoxI GACNNNNGTC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 130, 533, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 950
Bse118I RCCGGY 1 cut(s) 914
Bse1I ACTGG 3 cut(s) 18, 619, 846
Bse3DI GCAATG 2 cut(s) 71, 202
BseDI CCNNGG 3 cut(s) 130, 533, 721
BseLI CCNNNNNNNGG 1 cut(s) 950
BseMI GCAATG 2 cut(s) 71, 202
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 3 cut(s) 18, 619, 846
BseX3I CGGCCG 1 cut(s) 916
Bsh1236I CGCG 1 cut(s) 700
Bsh1285I CGRYCG 1 cut(s) 919
BshFI GGCC 6 cut(s) 720, 842, 875, 918, 934, 955
BsiEI CGRYCG 1 cut(s) 919
BsiSI CCGG 1 cut(s) 915
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 950
BsmAI GTCTC 1 cut(s) 689
BsmBI CGTCTC 1 cut(s) 689
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 2 cut(s) 197, 258
BsnI GGCC 6 cut(s) 720, 842, 875, 918, 934, 955
Bsp143I GATC 4 cut(s) 23, 34, 483, 643
Bsp19I CCATGG 1 cut(s) 533
BspACI CCGC 5 cut(s) 76, 173, 480, 700, 919
BspANI GGCC 6 cut(s) 720, 842, 875, 918, 934, 955
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 1 cut(s) 700
BspPI GGATC 2 cut(s) 42, 491
BsrDI GCAATG 2 cut(s) 71, 202
BsrFI RCCGGY 1 cut(s) 914
BsrI ACTGG 3 cut(s) 18, 619, 846
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 3 cut(s) 130, 533, 721
BssMI GATC 4 cut(s) 23, 34, 483, 643
BssT1I CCWWGG 3 cut(s) 130, 533, 721
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 2 cut(s) 544, 807
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 242, 427
BstDSI CCRYGG 1 cut(s) 533
BstFNI CGCG 1 cut(s) 700
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 4 cut(s) 26, 37, 486, 646
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 4 cut(s) 23, 34, 483, 643
BstMCI CGRYCG 1 cut(s) 919
BstMWI GCNNNNNNNGC 2 cut(s) 159, 656
BstNSI RCATGY 2 cut(s) 309, 509
BstPAI GACNNNNGTC 1 cut(s) 413
BstSFI CTRYAG 3 cut(s) 168, 226, 807
BstUI CGCG 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 1 cut(s) 483
BstXI CCANNNNNNTGG 1 cut(s) 540
BstYI RGATCY 1 cut(s) 483
BstZI CGGCCG 1 cut(s) 916
BsuRI GGCC 6 cut(s) 720, 842, 875, 918, 934, 955
BtgI CCRYGG 1 cut(s) 533
BtgZI GCGATG 2 cut(s) 150, 921
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 2 cut(s) 773, 876
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 1 cut(s) 953
CseI GACGC 2 cut(s) 8, 706
Csp6I GTAC 3 cut(s) 69, 612, 676
CviAII CATG 5 cut(s) 306, 494, 506, 534, 647
CviQI GTAC 3 cut(s) 69, 612, 676
DdeI CTNAG 2 cut(s) 242, 427
DpnI GATC 4 cut(s) 25, 36, 485, 645
DpnII GATC 4 cut(s) 23, 34, 483, 643
DraI TTTAAA 1 cut(s) 237
DrdI GACNNNNNNGTC 1 cut(s) 18
DseDI GACNNNNNNGTC 1 cut(s) 18
EaeI YGGCCR 2 cut(s) 718, 916
EagI CGGCCG 1 cut(s) 916
Eam1104I CTCTTC 2 cut(s) 544, 807
EarI CTCTTC 2 cut(s) 544, 807
EclXI CGGCCG 1 cut(s) 916
Eco130I CCWWGG 3 cut(s) 130, 533, 721
Eco32I GATATC 1 cut(s) 146
Eco52I CGGCCG 1 cut(s) 916
EcoRV GATATC 1 cut(s) 146
EcoT14I CCWWGG 3 cut(s) 130, 533, 721
EcoT22I ATGCAT 1 cut(s) 507
ErhI CCWWGG 3 cut(s) 130, 533, 721
Esp3I CGTCTC 1 cut(s) 689
FaeI CATG 5 cut(s) 309, 497, 509, 537, 650
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 305, 493, 505, 533, 646
FauI CCCGC 2 cut(s) 473, 693
Fnu4HI GCNGC 1 cut(s) 919
Fsp4HI GCNGC 1 cut(s) 919
FspBI CTAG 2 cut(s) 609, 950
FspI TGCGCA 1 cut(s) 293
GlaI GCGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 919
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 6 cut(s) 720, 842, 875, 918, 934, 955
HapII CCGG 1 cut(s) 915
HgaI GACGC 2 cut(s) 8, 706
HhaI GCGC 1 cut(s) 294
Hin1II CATG 5 cut(s) 309, 497, 509, 537, 650
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 2 cut(s) 181, 435
HpaII CCGG 1 cut(s) 915
Hpy166II GTNNAC 2 cut(s) 408, 912
Hpy188I TCNGA 5 cut(s) 64, 95, 245, 458, 731
Hpy188III TCNNGA 4 cut(s) 50, 178, 185, 339
Hpy8I GTNNAC 2 cut(s) 408, 912
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 6 cut(s) 425, 530, 554, 832, 865, 924
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4V TGCA 3 cut(s) 4, 195, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 656
HpyF3I CTNAG 2 cut(s) 242, 427
Hsp92II CATG 5 cut(s) 309, 497, 509, 537, 650
HspAI GCGC 1 cut(s) 292
Kzo9I GATC 4 cut(s) 23, 34, 483, 643
LmnI GCTCC 1 cut(s) 817
LpnPI CCDG 7 cut(s) 16, 93, 368, 600, 819, 859, 928
LweI GCATC 5 cut(s) 32, 279, 307, 492, 724
MaeI CTAG 2 cut(s) 609, 950
MaeIII GTNAC 3 cut(s) 436, 513, 748
MalI GATC 4 cut(s) 25, 36, 485, 645
MboI GATC 4 cut(s) 23, 34, 483, 643
MboII GAAGA 6 cut(s) 326, 561, 569, 618, 716, 794
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 1 cut(s) 483
MlsI TGGCCA 1 cut(s) 720
MluCI AATT 2 cut(s) 441, 755
MluNI TGGCCA 1 cut(s) 720
MlyI GAGTC 1 cut(s) 444
MnlI CCTC 3 cut(s) 181, 335, 518
Mox20I TGGCCA 1 cut(s) 720
Mph1103I ATGCAT 1 cut(s) 507
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 720
MseI TTAA 5 cut(s) 99, 207, 236, 365, 789
MslI CAYNNNNRTG 2 cut(s) 76, 538
Msp20I TGGCCA 1 cut(s) 720
MspA1I CMGCKG 1 cut(s) 921
MspI CCGG 1 cut(s) 915
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 2 cut(s) 197, 258
MvnI CGCG 1 cut(s) 700
MwoI GCNNNNNNNGC 2 cut(s) 159, 656
NcoI CCATGG 1 cut(s) 533
NdeII GATC 4 cut(s) 23, 34, 483, 643
NlaIII CATG 5 cut(s) 309, 497, 509, 537, 650
NmuCI GTSAC 1 cut(s) 436
NsbI TGCGCA 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 2 cut(s) 309, 509
PciI ACATGT 1 cut(s) 305
PctI GAATGC 2 cut(s) 197, 258
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 920
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
PscI ACATGT 1 cut(s) 305
PshAI GACNNNNGTC 1 cut(s) 413
PsiI TTATAA 1 cut(s) 348
PspPI GGNCC 1 cut(s) 953
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 3 cut(s) 70, 613, 677
RsaNI GTAC 3 cut(s) 69, 612, 676
RseI CAYNNNNRTG 2 cut(s) 76, 538
SaqAI TTAA 5 cut(s) 99, 207, 236, 365, 789
SatI GCNGC 1 cut(s) 919
Sau3AI GATC 4 cut(s) 23, 34, 483, 643
Sau96I GGNCC 1 cut(s) 953
ScaI AGTACT 2 cut(s) 613, 677
SchI GAGTC 1 cut(s) 444
SetI ASST 8 cut(s) 109, 132, 346, 357, 426, 529, 814, 831
SfaNI GCATC 5 cut(s) 32, 279, 307, 492, 724
SfcI CTRYAG 3 cut(s) 168, 226, 807
SmiMI CAYNNNNRTG 2 cut(s) 76, 538
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 2 cut(s) 441, 755
SsiI CCGC 5 cut(s) 76, 173, 480, 700, 919
SspI AATATT 3 cut(s) 122, 377, 397
SspMI CTAG 2 cut(s) 609, 950
StyI CCWWGG 3 cut(s) 130, 533, 721
TaaI ACNGT 1 cut(s) 748
TaqI TCGA 3 cut(s) 22, 184, 523
TasI AATT 2 cut(s) 441, 755
TatI WGTACW 2 cut(s) 611, 675
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 5 cut(s) 99, 207, 236, 365, 789
Tru9I TTAA 5 cut(s) 99, 207, 236, 365, 789
TscAI CASTG 2 cut(s) 780, 883
TseFI GTSAC 1 cut(s) 436
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 2 cut(s) 251, 611
TspRI CASTG 2 cut(s) 780, 883
XapI RAATTY 1 cut(s) 755
XceI RCATGY 2 cut(s) 309, 509
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 2 cut(s) 609, 950
ZrmI AGTACT 2 cut(s) 613, 677
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.