Rh7BG178300

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000415
Physical Location & Seq
Forward (+)
14073120 .. 14074682
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG178300.1

Sequence Viewer

Length: 435 bp
ATGCAGGAAATTCTCCGTGTGGAAATGGGAGGAATTTTGGCACATGAGATGATGCATGCATGGTTGTACCTTCAAGCAGGTAGGCCATGGAAATGGGAAAGAAGCGTTGAAGAAGGTATTTGCGAAGTGATGTATTATAAATGGTTGCTATGGTTTTCTTCTAGTGGTTTTAACTCTTCGCACAAAACCGAAGAGCAAGTTCAACATACAAGAAAGTTGAAAGAGATCTTGTCACAGAGGACTGAAGGGCAGGGAGACGAAGTTTATGGTCTAGGATTTATAAATGCTATGCGTGCTATTGAAACATTTGGGTTCAAAACTACGCTGGATCATACCGTTAAGAATGGAACTCTGCCGGTGGTTCCACCGCCGGTAGTGATGAGGAAGAAAACCACCGCCACCCCCACTGAGTCAATGAGGAAGAAGACCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

144

Amino Acids

16.65

Weight (kDa)

9.04

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 6 - 112 1.6e-20 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 138, 281
Acc36I ACCTGC 1 cut(s) 68
AciI CCGC 2 cut(s) 368, 396
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 2 cut(s) 9, 33
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 6 cut(s) 74, 110, 203, 220, 302, 316
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 1 cut(s) 336
AoxI GGCC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 9, 33
BbsI GAAGAC 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 2 cut(s) 162, 272
BfuAI ACCTGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 363
BmsI GCATC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse118I RCCGGY 2 cut(s) 355, 370
BseDI CCNNGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 399
BshFI GGCC 1 cut(s) 85
BsiSI CCGG 2 cut(s) 356, 371
BsmAI GTCTC 1 cut(s) 249
BsmBI CGTCTC 1 cut(s) 249
BsnI GGCC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 225, 328
Bsp19I CCATGG 1 cut(s) 86
BspACI CCGC 2 cut(s) 368, 396
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 336
BspQI GCTCTTC 1 cut(s) 186
BsrFI RCCGGY 2 cut(s) 355, 370
BssAI RCCGGY 2 cut(s) 355, 370
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 225, 328
BssT1I CCWWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 181, 186
BstC8I GCNNGC 2 cut(s) 57, 294
BstDEI CTNAG 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 86
BstKTI GATC 2 cut(s) 228, 331
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 225, 328
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 57, 294
Cfr10I RCCGGY 2 cut(s) 355, 370
Csp6I GTAC 1 cut(s) 67
CviAII CATG 4 cut(s) 44, 56, 60, 87
CviJI RGCY 1 cut(s) 85
CviKI_1 RGCY 1 cut(s) 85
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 408
DpnI GATC 2 cut(s) 227, 330
DpnII GATC 2 cut(s) 225, 328
Eam1104I CTCTTC 2 cut(s) 181, 186
EarI CTCTTC 2 cut(s) 181, 186
Eco130I CCWWGG 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 86
EcoT22I ATGCAT 2 cut(s) 57, 61
ErhI CCWWGG 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 4 cut(s) 47, 59, 63, 90
FatI CATG 4 cut(s) 43, 55, 59, 86
FspBI CTAG 2 cut(s) 162, 272
HaeIII GGCC 1 cut(s) 85
HapII CCGG 2 cut(s) 356, 371
Hin1II CATG 4 cut(s) 47, 59, 63, 90
HinfI GANTC 1 cut(s) 410
HpaII CCGG 2 cut(s) 356, 371
HpyAV CCTTC 3 cut(s) 80, 107, 239
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 3 cut(s) 4, 55, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 408
Hsp92II CATG 4 cut(s) 47, 59, 63, 90
Kzo9I GATC 2 cut(s) 225, 328
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 5 cut(s) 63, 236, 311, 369, 384
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 162, 272
MaeIII GTNAC 1 cut(s) 231
MalI GATC 2 cut(s) 227, 330
MboI GATC 2 cut(s) 225, 328
MboII GAAGA 6 cut(s) 122, 150, 168, 203, 397, 433
MflI RGATCY 1 cut(s) 225
MluCI AATT 2 cut(s) 9, 33
MlyI GAGTC 1 cut(s) 419
MnlI CCTC 4 cut(s) 23, 231, 375, 411
Mph1103I ATGCAT 2 cut(s) 57, 61
MseI TTAA 2 cut(s) 171, 339
MslI CAYNNNNRTG 1 cut(s) 91
MspI CCGG 2 cut(s) 356, 371
MwoI GCNNNNNNNGC 1 cut(s) 293
NcoI CCATGG 1 cut(s) 86
NdeII GATC 2 cut(s) 225, 328
NlaIII CATG 4 cut(s) 47, 59, 63, 90
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 231
NsiI ATGCAT 2 cut(s) 57, 61
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 186
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PsiI TTATAA 2 cut(s) 138, 281
PspN4I GGNNCC 1 cut(s) 363
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 171, 339
Sau3AI GATC 2 cut(s) 225, 328
SchI GAGTC 1 cut(s) 419
SetI ASST 3 cut(s) 72, 82, 118
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 91
SphI GCATGC 1 cut(s) 59
Sse9I AATT 2 cut(s) 9, 33
SsiI CCGC 2 cut(s) 368, 396
SspMI CTAG 2 cut(s) 162, 272
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 337
TasI AATT 2 cut(s) 9, 33
Tru1I TTAA 2 cut(s) 171, 339
Tru9I TTAA 2 cut(s) 171, 339
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 412
XapI RAATTY 2 cut(s) 9, 33
XceI RCATGY 1 cut(s) 59
XspI CTAG 2 cut(s) 162, 272
Zsp2I ATGCAT 2 cut(s) 57, 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.