Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000415

Physical Location & Seq

Genomic Coordinates Reverse (-)

10449487 .. 10451290

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG123600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCGCAGATTAACGACTCTGAGGAAGTGAAGCATGATATTAGTTTGGCAAACGCTTACGATCCATGGTGTAATACTTGCTTCAGATATAAGGAAGCTGGAGAAACAGGATGTCTGAACCTTGGTGATGGCCGACAACTTTGCTCAGATTGTTCTTCTATAGCGGTCACGAATTTAGAGGAATGCAATTTCATAATCCAAAATGTGTTTGAATTCTACAGAATCTTAAATCTCAAAGTGGATGAAAAAATTCCCATCTTCTTCGTCGACAAGATTCAAATGAGCAGAATATCTCAAGATGGTACAGTTGCTATTTTCATTCCAAGAATATCGGCTTACTTTACACCGTCAACGGCTTGCATACCATTACGAGTTAAAATGATGCTTATTTTAGCTAGATTTATTATACGCAGTATTCAAACGATAGAAAAATATTCGGGAAGTGGAGGTGGAATTAAAAAGGTTGTGAAGCTCCCACTAGGAGAGGCAATTGTACTTTTGTTTGGAACACCAGGGTATGTATATGTGTTCTTTGTCAAATACCTTGATATAGTTTACAAATTCTATAACAACATACTCCCCTTTATAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

197

Amino Acids

22.39

Weight (kDa)

8.11

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica	MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica	Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata	RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora	Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii	Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa	Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha	Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana	Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	4 cut(s)	172, 212, 249, 560
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	2 cut(s)	304, 495
AgsI	TTSAA	3 cut(s)	212, 278, 419
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	3 cut(s)	98, 395, 472
AluI	AGCT	3 cut(s)	98, 395, 472
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	4 cut(s)	172, 212, 249, 560
Asp700I	GAANNNNTTC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	137
BccI	CCATC	3 cut(s)	122, 263, 293
BceAI	ACGGC	1 cut(s)	369
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BciT130I	CCWGG	1 cut(s)	513
BfaI	CTAG	2 cut(s)	396, 479
BfmI	CTRYAG	2 cut(s)	159, 217
Bme1390I	CCNGG	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	65, 121, 512
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	65, 121, 512
BseGI	GGATG	2 cut(s)	116, 247
BseMII	CTCAG	2 cut(s)	12, 159
BshFI	GGCC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	13, 158
BspPI	GGATC	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	65, 121, 512
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	65, 121
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	307, 348
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	21, 145
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	116, 247
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	159, 217
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	116, 247
Cac8I	GCNNGC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	303, 494
CviAII	CATG	2 cut(s)	35, 66
CviJI	RGCY	6 cut(s)	98, 132, 335, 356, 395, 472
CviKI_1	RGCY	6 cut(s)	98, 132, 335, 356, 395, 472
CviQI	GTAC	2 cut(s)	303, 494
DdeI	CTNAG	2 cut(s)	21, 145
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	65, 121
Eco57I	CTGAAG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	65, 121
ErhI	CCWWGG	2 cut(s)	65, 121
FaeI	CATG	2 cut(s)	38, 69
FatI	CATG	2 cut(s)	34, 65
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	2 cut(s)	123, 254
FspBI	CTAG	2 cut(s)	396, 479
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	38, 69
HincII	GTYRAC	2 cut(s)	268, 351
HindII	GTYRAC	2 cut(s)	268, 351
HinfI	GANTC	3 cut(s)	17, 222, 274
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	3 cut(s)	268, 351, 556
Hpy188I	TCNGA	4 cut(s)	22, 86, 117, 148
Hpy188III	TCNNGA	3 cut(s)	169, 296, 438
Hpy8I	GTNNAC	3 cut(s)	268, 351, 556
Hpy99I	CGWCG	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	307, 348
HpyCH4V	TGCA	2 cut(s)	186, 360
HpyF3I	CTNAG	2 cut(s)	21, 145
Hsp92II	CATG	2 cut(s)	38, 69
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	477
LpnPI	CCDG	4 cut(s)	84, 93, 498, 525
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	2 cut(s)	396, 479
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	147, 250, 253
MfeI	CAATTG	1 cut(s)	489
MluCI	AATT	7 cut(s)	172, 187, 212, 249, 453, 489, 560
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	4 cut(s)	16, 172, 440, 478
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	4 cut(s)	12, 227, 375, 456
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	513
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	38, 69
NmuCI	GTSAC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	222, 274
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
RsaI	GTAC	2 cut(s)	304, 495
RsaNI	GTAC	2 cut(s)	303, 494
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	4 cut(s)	12, 227, 375, 456
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	7 cut(s)	100, 123, 397, 451, 465, 474, 546
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	159, 217
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	7 cut(s)	172, 187, 212, 249, 453, 489, 560
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	434
SspMI	CTAG	2 cut(s)	396, 479
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	2 cut(s)	65, 121
TaaI	ACNGT	2 cut(s)	307, 348
TaqI	TCGA	1 cut(s)	267
TasI	AATT	7 cut(s)	172, 187, 212, 249, 453, 489, 560
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	2 cut(s)	222, 274
Tru1I	TTAA	4 cut(s)	12, 227, 375, 456
Tru9I	TTAA	4 cut(s)	12, 227, 375, 456
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	181, 258, 307
XapI	RAATTY	4 cut(s)	172, 212, 249, 560
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	396, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.