Rmu_sc0002023.1_g000017

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002023.1
OG0000415
Physical Location & Seq
Forward (+)
79351 .. 79926
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002023.1_g000017.1.cds

Sequence Viewer

Length: 576 bp
atgttggtcgaccaggaagagatgtgcaaatgttgcggagaaaaacccagtacagaagacggtaatagacgactttttactggtgttatatttttccctagacggcgtgctcgtgttctcacgagcattacaaaatgttcaaaaattggggaagatatccaagtgaagaaaaaaactggcccaccccctcgtaacaaaattacaattctagttttgttcggagtaccagacctgttggtcggtggagctttggcacacgagatgatgcatgcatggttgcaccttcaagattgtaggaaaaaattggaagaaaaggttgaagaagggatttgtgaagtgatgtgccacaagtggatctgttccagtgatgatcttgatcactcctcatacaaaacctataagcagggccagtttaagagaaaattgaaacaacttctggtagaatcgatggaaacccggccagacatttatggccaaggatacagagaggctactagggcaattgaaaagtttggcttccaaacgactctaaaccatattgttcaaaaagaaagtttccctcaccgcgaaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

191

Amino Acids

22.1

Weight (kDa)

8.98

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 9
AccII CGCG 1 cut(s) 567
AciI CCGC 2 cut(s) 36, 565
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 2 cut(s) 458, 472
AfaI GTAC 2 cut(s) 52, 225
AgsI TTSAA 6 cut(s) 141, 287, 320, 427, 506, 545
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 112
AlwI GGATC 1 cut(s) 362
AoxI GGCC 4 cut(s) 178, 406, 458, 472
AspS9I GGNCC 2 cut(s) 179, 406
AsuC2I CCSGG 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 554
BalI TGGCCA 1 cut(s) 474
BauI CACGAG 3 cut(s) 111, 121, 257
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 112
BccI CCATC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 1 cut(s) 457
BfaI CTAG 3 cut(s) 99, 209, 495
BfuI GTATCC 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 14, 457
BmgT120I GGNCC 2 cut(s) 179, 406
BmrFI CCNGG 2 cut(s) 14, 457
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 457
Bsa29I ATCGAT 1 cut(s) 446
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 475
Bse1I ACTGG 5 cut(s) 48, 85, 181, 363, 409
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 375
BseNI ACTGG 5 cut(s) 48, 85, 181, 363, 409
BseRI GAGGAG 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 4 cut(s) 180, 408, 460, 474
BshVI ATCGAT 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 457
BsnI GGCC 4 cut(s) 180, 408, 460, 474
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 3 cut(s) 354, 370, 376
BspACI CCGC 2 cut(s) 36, 565
BspANI GGCC 4 cut(s) 180, 408, 460, 474
BspDI ATCGAT 1 cut(s) 446
BspFNI CGCG 1 cut(s) 567
BspPI GGATC 1 cut(s) 362
BsrI ACTGG 5 cut(s) 48, 85, 181, 363, 409
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 3 cut(s) 354, 370, 376
BssSI CACGAG 3 cut(s) 111, 121, 257
BssT1I CCWWGG 1 cut(s) 475
Bst2BI CACGAG 3 cut(s) 111, 121, 257
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 108, 270
BstFNI CGCG 1 cut(s) 567
BstKTI GATC 3 cut(s) 357, 373, 379
BstMBI GATC 3 cut(s) 354, 370, 376
BstMWI GCNNNNNNNGC 2 cut(s) 33, 497
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 12, 455
BstUI CGCG 1 cut(s) 567
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
Bsu15I ATCGAT 1 cut(s) 446
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 4 cut(s) 180, 408, 460, 474
BsuTUI ATCGAT 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 108, 270
Cfr13I GGNCC 2 cut(s) 179, 406
ClaI ATCGAT 1 cut(s) 446
Csp6I GTAC 2 cut(s) 51, 224
CviAII CATG 2 cut(s) 269, 273
CviJI RGCY 7 cut(s) 180, 248, 408, 460, 474, 491, 516
CviKI_1 RGCY 7 cut(s) 180, 248, 408, 460, 474, 491, 516
CviQI GTAC 2 cut(s) 51, 224
DpnI GATC 3 cut(s) 356, 372, 378
DpnII GATC 3 cut(s) 354, 370, 376
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 2 cut(s) 458, 472
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 475
Eco32I GATATC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 475
EcoT22I ATGCAT 2 cut(s) 270, 274
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 2 cut(s) 272, 276
FaiI YATR 7 cut(s) 89, 270, 274, 388, 399, 471, 537
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FatI CATG 2 cut(s) 268, 272
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 9
FspBI CTAG 3 cut(s) 99, 209, 495
HaeIII GGCC 4 cut(s) 180, 408, 460, 474
HapII CCGG 1 cut(s) 457
Hin1II CATG 2 cut(s) 272, 276
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 2 cut(s) 443, 526
HpaII CCGG 1 cut(s) 457
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 3 cut(s) 121, 287, 374
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 293, 317
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 4 cut(s) 27, 268, 272, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 497
Hsp92II CATG 2 cut(s) 272, 276
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 3 cut(s) 354, 370, 376
LmnI GCTCC 1 cut(s) 245
LweI GCATC 1 cut(s) 255
MaeI CTAG 3 cut(s) 99, 209, 495
MaeIII GTNAC 1 cut(s) 191
MalI GATC 3 cut(s) 356, 372, 378
MboI GATC 3 cut(s) 354, 370, 376
MboII GAAGA 6 cut(s) 29, 68, 164, 178, 320, 332
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 6 cut(s) 144, 198, 204, 302, 422, 501
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 1 cut(s) 520
MnlI CCTC 4 cut(s) 198, 394, 481, 570
Mox20I TGGCCA 1 cut(s) 474
Mph1103I ATGCAT 2 cut(s) 270, 274
MscI TGGCCA 1 cut(s) 474
MseI TTAA 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 474
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 2 cut(s) 14, 457
MunI CAATTG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 33, 497
NciI CCSGG 1 cut(s) 457
NdeII GATC 3 cut(s) 354, 370, 376
NlaIII CATG 2 cut(s) 272, 276
NsiI ATGCAT 2 cut(s) 270, 274
NspI RCATGY 1 cut(s) 272
PaeI GCATGC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PfeI GAWTC 1 cut(s) 443
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 2 cut(s) 179, 406
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 2 cut(s) 52, 225
RsaNI GTAC 2 cut(s) 51, 224
SalI GTCGAC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 414
Sau3AI GATC 3 cut(s) 354, 370, 376
Sau96I GGNCC 2 cut(s) 179, 406
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 2 cut(s) 14, 457
SduI GDGCHC 1 cut(s) 112
SetI ASST 5 cut(s) 234, 250, 285, 318, 398
SfaNI GCATC 1 cut(s) 255
SphI GCATGC 1 cut(s) 272
Sse9I AATT 6 cut(s) 144, 198, 204, 302, 422, 501
SsiI CCGC 2 cut(s) 36, 565
SspMI CTAG 3 cut(s) 99, 209, 495
StyD4I CCNGG 2 cut(s) 12, 455
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 9, 446
TasI AATT 6 cut(s) 144, 198, 204, 302, 422, 501
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 370
TspRI CASTG 1 cut(s) 370
XceI RCATGY 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 3 cut(s) 99, 209, 495
Zsp2I ATGCAT 2 cut(s) 270, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.