RchiOBHm_Chr6g0282811

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000415
Physical Location & Seq
Reverse (-)
46051299 .. 46052150
852 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25357

Sequence Viewer

Length: 522 bp
ATGTGTGTGTCTGTGTGTCAGACCTTTATATTACTACTAGATTTTGACTCGGTATATTTCAGTATAGCCATGGGAGGAACTTTAGCACATGAGATGATGCATGCTTGGTTGAAACTTCAAGGTTGTAAGCCGTGGGAATGGGAAAGAAGAGTTGAAGAAGGGATCTGCCAAGTAATGAAGTACAAGTGGATGGAATGGTTTTGTTCTAGTAGTGATTTTGACTCTTGGTACAAAACCAATGAGCAAGCTCAATACGCAAGAAAGTTGAAAGAGTATCAAGTCCAAGTGATGGAGAGGTGGGTAGATAAAGTTTATGGCCAAGGGTTCAGAGATGCTATGAAGGCTGTAGAAATGTTTGGCTTCGAAACCACGCTGCACTACATCGTTGAAAAAGGAAAATTCCCTCGCAGTCAACCACCTCCTGTCCCGATTCCTAGGACACCTAGGGATGAAAGATGGAAGGGGGCTGTATGCGCTGTAGCTCATATAGCTCTTGTTTTTCTTTTAATGAAGGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

173

Amino Acids

20.44

Weight (kDa)

8.5

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 22 - 129 3.6e-25 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 289
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 2 cut(s) 182, 230
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 5 cut(s) 112, 119, 155, 268, 389
AluBI AGCT 3 cut(s) 248, 482, 491
AluI AGCT 3 cut(s) 248, 482, 491
AlwI GGATC 1 cut(s) 170
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 398
AspA2I CCTAGG 2 cut(s) 434, 443
AspLEI GCGC 1 cut(s) 476
AsuII TTCGAA 1 cut(s) 363
AvrII CCTAGG 2 cut(s) 434, 443
BalI TGGCCA 1 cut(s) 318
BbvI GCAGC 1 cut(s) 360
BccI CCATC 3 cut(s) 184, 283, 450
BceAI ACGGC 1 cut(s) 115
BfaI CTAG 5 cut(s) 38, 207, 435, 444, 516
BfmI CTRYAG 2 cut(s) 345, 477
BisI GCNGC 1 cut(s) 374
BlnI CCTAGG 2 cut(s) 434, 443
BlsI GCNGC 1 cut(s) 375
BmsI GCATC 2 cut(s) 87, 322
Bpu14I TTCGAA 1 cut(s) 363
BsaJI CCNNGG 5 cut(s) 69, 131, 319, 434, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 289
BseDI CCNNGG 5 cut(s) 69, 131, 319, 434, 443
BseGI GGATG 2 cut(s) 195, 454
BseLI CCNNNNNNNGG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 360
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 1 cut(s) 318
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 1 cut(s) 318
Bsp119I TTCGAA 1 cut(s) 363
Bsp143I GATC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 69
BspANI GGCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 363
BssECI CCNNGG 5 cut(s) 69, 131, 319, 434, 443
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 4 cut(s) 69, 319, 434, 443
Bst6I CTCTTC 1 cut(s) 142
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 102, 246
BstDSI CCRYGG 2 cut(s) 69, 131
BstF5I GGATG 2 cut(s) 195, 454
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 254, 341, 473, 488
BstNSI RCATGY 1 cut(s) 104
BstSFI CTRYAG 2 cut(s) 345, 477
BstV1I GCAGC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 1 cut(s) 318
BtgI CCRYGG 2 cut(s) 69, 131
BtsCI GGATG 2 cut(s) 195, 454
Cac8I GCNNGC 2 cut(s) 102, 246
CfoI GCGC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 181, 229
CviAII CATG 3 cut(s) 70, 89, 101
CviQI GTAC 2 cut(s) 181, 229
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco130I CCWWGG 4 cut(s) 69, 319, 434, 443
EcoT14I CCWWGG 4 cut(s) 69, 319, 434, 443
EcoT22I ATGCAT 1 cut(s) 102
ErhI CCWWGG 4 cut(s) 69, 319, 434, 443
FaeI CATG 3 cut(s) 73, 92, 104
FaqI GGGAC 1 cut(s) 410
FatI CATG 3 cut(s) 69, 88, 100
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 202, 461
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 5 cut(s) 38, 207, 435, 444, 516
GlaI GCGC 1 cut(s) 475
GluI GCNGC 1 cut(s) 374
HaeIII GGCC 1 cut(s) 318
HhaI GCGC 1 cut(s) 476
Hin1II CATG 3 cut(s) 73, 92, 104
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HincII GTYRAC 1 cut(s) 413
HindII GTYRAC 1 cut(s) 413
HinfI GANTC 3 cut(s) 47, 221, 430
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 2 cut(s) 21, 329
Hpy188III TCNNGA 1 cut(s) 427
Hpy8I GTNNAC 1 cut(s) 413
HpyAV CCTTC 4 cut(s) 152, 334, 454, 505
HpyCH4V TGCA 2 cut(s) 100, 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 341, 473, 488
Hsp92II CATG 3 cut(s) 73, 92, 104
HspAI GCGC 1 cut(s) 474
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 1 cut(s) 435
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 2 cut(s) 87, 322
MaeI CTAG 5 cut(s) 38, 207, 435, 444, 516
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 159, 167
MflI RGATCY 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 1 cut(s) 398
MluNI TGGCCA 1 cut(s) 318
MlyI GAGTC 2 cut(s) 41, 215
MnlI CCTC 4 cut(s) 68, 288, 414, 429
Mox20I TGGCCA 1 cut(s) 318
Mph1103I ATGCAT 1 cut(s) 102
MscI TGGCCA 1 cut(s) 318
MseI TTAA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 318
MwoI GCNNNNNNNGC 4 cut(s) 254, 341, 473, 488
NcoI CCATGG 1 cut(s) 69
NdeII GATC 1 cut(s) 162
NlaIII CATG 3 cut(s) 73, 92, 104
NsiI ATGCAT 1 cut(s) 102
NspI RCATGY 1 cut(s) 104
NspV TTCGAA 1 cut(s) 363
PaeI GCATGC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 2 cut(s) 41, 215
PpsI GAGTC 2 cut(s) 41, 215
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 2 cut(s) 182, 230
RsaNI GTAC 2 cut(s) 181, 229
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 1 cut(s) 162
SchI GAGTC 2 cut(s) 41, 215
SetI ASST 8 cut(s) 26, 124, 250, 299, 421, 445, 484, 493
SfaNI GCATC 2 cut(s) 87, 322
SfcI CTRYAG 2 cut(s) 345, 477
SfuI TTCGAA 1 cut(s) 363
SphI GCATGC 1 cut(s) 104
Sse9I AATT 1 cut(s) 398
SspMI CTAG 5 cut(s) 38, 207, 435, 444, 516
StyI CCWWGG 4 cut(s) 69, 319, 434, 443
TaqI TCGA 1 cut(s) 363
TasI AATT 1 cut(s) 398
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 191, 353, 465
Van91I CCANNNNNTGG 1 cut(s) 289
XapI RAATTY 1 cut(s) 398
XceI RCATGY 1 cut(s) 104
XmaJI CCTAGG 2 cut(s) 434, 443
XspI CTAG 5 cut(s) 38, 207, 435, 444, 516
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.