Rh2DG568500

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000415
Physical Location & Seq
Reverse (-)
79802844 .. 79803568
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG568500.1

Sequence Viewer

Length: 480 bp
ATGATGAAAACCTTTCGAAAGACGGTGTTCCAATTTCTATCATTCATTGAGGGGAAATTCAATGAACTGAAGAAGATGAAGAATGTACGCAACAACTCATGTGATGTTTGCAATAAATCGAGTAATGAATTGCACAGCAAAAGATTTTGGGGCCAAAGAATTTGTTCGGGACATGTATCTGATGGGACTCCTAGATGTACTAGTTGTGGTAGATTTAAGCACGTAAAAACAAAATATGTGAACCTTGATGGTGGGCAACTTTGCTCGGATTGCTATTCTATTGCTATTTTGGATCCACAACAATTAGAACCCATCATTGGAAACGTGCATGAATTCTTCAAAAGTTTAAATCTTGAAGTGAATAAAGACATTCGAATTATGTTGGTCGACCAGGAAGAGATGTGCAAACGTTGCGGAGAAAAACCCAGTACAGAAGACGGTAATAGACGACTTTTTTACTGGTGTTATATTTTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

159

Amino Acids

18.55

Weight (kDa)

8.92

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 387
AciI CCGC 1 cut(s) 414
AclI AACGTT 1 cut(s) 409
AclWI GGATC 2 cut(s) 287, 300
AcsI RAATTY 3 cut(s) 56, 159, 332
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 3 cut(s) 87, 199, 430
AfiI CCNNNNNNNGG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 3 cut(s) 61, 340, 356
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 1 cut(s) 390
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AlwI GGATC 2 cut(s) 287, 300
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 3 cut(s) 56, 159, 332
Asp700I GAANNNNTTC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 151
AsuII TTCGAA 2 cut(s) 16, 373
BamHI GGATCC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 441
BccI CCATC 3 cut(s) 176, 242, 320
BciT130I CCWGG 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 3 cut(s) 192, 201, 478
Bme1390I CCNGG 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 152, 294
BmrFI CCNGG 1 cut(s) 392
BmrI ACTGGG 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 441
Bpu14I TTCGAA 2 cut(s) 16, 373
BsaAI YACGTR 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 426, 464
BseBI CCWGG 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 426, 464
BshFI GGCC 1 cut(s) 153
BslFI GGGAC 2 cut(s) 183, 199
BslI CCNNNNNNNGG 1 cut(s) 317
BsmFI GGGAC 2 cut(s) 183, 199
BsnI GGCC 1 cut(s) 153
Bsp119I TTCGAA 2 cut(s) 16, 373
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 414
BspANI GGCC 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 152, 294
BspPI GGATC 2 cut(s) 287, 300
BspT104I TTCGAA 2 cut(s) 16, 373
BsrI ACTGG 2 cut(s) 426, 464
BssMI GATC 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 2 cut(s) 25, 440
Bst6I CTCTTC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 223
BstBI TTCGAA 2 cut(s) 16, 373
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 270, 411
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuRI GGCC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 3 cut(s) 86, 198, 429
CviAII CATG 3 cut(s) 99, 173, 329
CviJI RGCY 1 cut(s) 153
CviKI_1 RGCY 1 cut(s) 153
CviQI GTAC 3 cut(s) 86, 198, 429
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DraI TTTAAA 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 390
FaeI CATG 3 cut(s) 102, 176, 332
FaiI YATR 6 cut(s) 100, 174, 237, 330, 380, 468
FaqI GGGAC 2 cut(s) 183, 199
FatI CATG 3 cut(s) 98, 172, 328
FblI GTMKAC 1 cut(s) 387
FspBI CTAG 3 cut(s) 192, 201, 478
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 3 cut(s) 102, 176, 332
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 241, 388
Hpy188I TCNGA 2 cut(s) 181, 268
Hpy188III TCNNGA 2 cut(s) 168, 353
Hpy8I GTNNAC 2 cut(s) 241, 388
HpyCH4III ACNGT 2 cut(s) 25, 440
HpyCH4IV ACGT 3 cut(s) 222, 324, 409
HpyCH4V TGCA 4 cut(s) 111, 133, 328, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 270, 411
HpySE526I ACGT 3 cut(s) 222, 324, 409
Hsp92II CATG 3 cut(s) 102, 176, 332
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 377, 404, 439, 445
MaeI CTAG 3 cut(s) 192, 201, 478
MaeII ACGT 3 cut(s) 222, 324, 409
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 6 cut(s) 82, 85, 91, 328, 407, 446
MflI RGATCY 1 cut(s) 292
MluCI AATT 7 cut(s) 32, 56, 128, 159, 302, 332, 375
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 163
MseI TTAA 2 cut(s) 216, 347
MspR9I CCNGG 1 cut(s) 392
MvaI CCWGG 1 cut(s) 392
MwoI GCNNNNNNNGC 2 cut(s) 270, 411
NdeII GATC 1 cut(s) 292
NlaIII CATG 3 cut(s) 102, 176, 332
NlaIV GGNNCC 2 cut(s) 152, 294
NspI RCATGY 1 cut(s) 176
NspV TTCGAA 2 cut(s) 16, 373
PciI ACATGT 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 163
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 223
PscI ACATGT 1 cut(s) 172
Psp1406I AACGTT 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 2 cut(s) 152, 294
PspPI GGNCC 1 cut(s) 151
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 3 cut(s) 87, 199, 430
RsaNI GTAC 3 cut(s) 86, 198, 429
SalI GTCGAC 1 cut(s) 386
SaqAI TTAA 2 cut(s) 216, 347
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 392
SetI ASST 5 cut(s) 14, 225, 246, 327, 412
SfuI TTCGAA 2 cut(s) 16, 373
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 7 cut(s) 32, 56, 128, 159, 302, 332, 375
SsiI CCGC 1 cut(s) 414
SspMI CTAG 3 cut(s) 192, 201, 478
StyD4I CCNGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 25, 440
TaiI ACGT 3 cut(s) 225, 327, 412
TaqI TCGA 4 cut(s) 16, 119, 373, 387
TasI AATT 7 cut(s) 32, 56, 128, 159, 302, 332, 375
TatI WGTACW 2 cut(s) 197, 428
Tru1I TTAA 2 cut(s) 216, 347
Tru9I TTAA 2 cut(s) 216, 347
TspDTI ATGAA 6 cut(s) 20, 34, 78, 92, 141, 345
XapI RAATTY 3 cut(s) 56, 159, 332
XceI RCATGY 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 3 cut(s) 192, 201, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.