Rh6AG288000

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000415
Physical Location & Seq
Reverse (-)
48417443 .. 48420637
3195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG288000.1

Sequence Viewer

Length: 453 bp
ATGGCTACTCAGTGTGGTGTCTGCAATGTATATTCTAATAAATTGAGCTATACATATTGGGAGGAATATGTGTGTGGTGAACATGCCTCTGATGGGACTCTTAGGTGTCATACCTGTCGTAGATTTAAGAAAGCTCAGGACCCAGAATATTTGGACCTTAATGATAATGGCAGAAAACTTTGCTCATATTGTTCTAGCATTGCTACCTTGGATCCAAAGGAATGCATGCCCCTTATTCAAAATGTGCGTGAATTTTATAGAAGTTTAAACATCGTGGTGGATGAAACCATTCCTTTTTTGTTGGTCGACAAGGATATGATGCTCAAATTCATACCTGCAGTCAAAGAGACGATTGGTACCGTATGGTACAAGGATAGCAGTGTGCGTTCTTGCACAACGGTTGTAGAGGGAAATTGGAAAGAAGTGTTGAAGAAGGTCTTTTTCACATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

150

Amino Acids

17.33

Weight (kDa)

6.7

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 306
AclWI GGATC 2 cut(s) 206, 219
AcsI RAATTY 2 cut(s) 251, 326
AfaI GTAC 2 cut(s) 358, 368
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 2 cut(s) 239, 430
AluBI AGCT 2 cut(s) 48, 134
AluI AGCT 2 cut(s) 48, 134
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 2 cut(s) 206, 219
ApoI RAATTY 2 cut(s) 251, 326
Asp700I GAANNNNTTC 1 cut(s) 288
Asp718I GGTACC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 139, 154
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 2 cut(s) 139, 154
BamHI GGATCC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 356
BccI CCATC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 343
Bme18I GGWCC 2 cut(s) 139, 154
BmgT120I GGNCC 2 cut(s) 139, 154
BmiI GGNNCC 3 cut(s) 141, 213, 358
BmsI GCATC 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse3DI GCAATG 2 cut(s) 31, 198
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMI GCAATG 2 cut(s) 31, 198
BseMII CTCAG 2 cut(s) 23, 149
BshNI GGYRCC 1 cut(s) 356
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 211
BspCNI CTCAG 2 cut(s) 22, 148
BspLI GGNNCC 3 cut(s) 141, 213, 358
BspMAI CTGCAG 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 2 cut(s) 206, 219
BspT107I GGYRCC 1 cut(s) 356
BsrDI GCAATG 2 cut(s) 31, 198
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 361, 400
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 9, 101, 135
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 211
BstNSI RCATGY 3 cut(s) 86, 229, 450
BstSFI CTRYAG 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 17, 385
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 139, 154
Csp6I GTAC 2 cut(s) 357, 367
CviAII CATG 3 cut(s) 83, 226, 447
CviJI RGCY 3 cut(s) 5, 48, 134
CviKI_1 RGCY 3 cut(s) 5, 48, 134
CviQI GTAC 2 cut(s) 357, 367
DdeI CTNAG 3 cut(s) 9, 101, 135
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DraI TTTAAA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 139, 154
EcoO109I RGGNCCY 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 3 cut(s) 86, 229, 450
FalI AAGNNNNNCTT 1 cut(s) 422
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 82, 225, 446
FblI GTMKAC 1 cut(s) 306
FokI GGATG 1 cut(s) 293
FspBI CTAG 1 cut(s) 195
Hin1II CATG 3 cut(s) 86, 229, 450
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 1 cut(s) 97
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 80, 307
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 2 cut(s) 80, 307
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 2 cut(s) 361, 400
HpyCH4V TGCA 4 cut(s) 24, 225, 338, 393
HpyF3I CTNAG 3 cut(s) 9, 101, 135
Hsp92II CATG 3 cut(s) 86, 229, 450
KpnI GGTACC 1 cut(s) 360
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 4 cut(s) 122, 127, 156, 348
LweI GCATC 1 cut(s) 309
MaeI CTAG 1 cut(s) 195
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 442
MflI RGATCY 1 cut(s) 211
MluCI AATT 4 cut(s) 41, 251, 326, 412
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 3 cut(s) 55, 97, 400
Mph1103I ATGCAT 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 3 cut(s) 126, 159, 266
MslI CAYNNNNRTG 1 cut(s) 275
MssI GTTTAAAC 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 227
NdeII GATC 1 cut(s) 211
NlaIII CATG 3 cut(s) 86, 229, 450
NlaIV GGNNCC 3 cut(s) 141, 213, 358
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 3 cut(s) 86, 229, 450
PaeI GCATGC 1 cut(s) 229
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 288
PleI GAGTC 1 cut(s) 91
PmeI GTTTAAAC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 141, 213, 358
PspPI GGNCC 2 cut(s) 139, 154
PspPPI RGGWCCY 1 cut(s) 139
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 2 cut(s) 358, 368
RsaNI GTAC 2 cut(s) 357, 367
RseI CAYNNNNRTG 1 cut(s) 275
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 3 cut(s) 126, 159, 266
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 139, 154
SchI GAGTC 1 cut(s) 91
SetI ASST 8 cut(s) 50, 107, 116, 136, 159, 209, 337, 438
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 2 cut(s) 139, 154
SmiMI CAYNNNNRTG 1 cut(s) 275
SphI GCATGC 1 cut(s) 229
Sse9I AATT 4 cut(s) 41, 251, 326, 412
SspI AATATT 1 cut(s) 149
SspMI CTAG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 361, 400
TaqI TCGA 1 cut(s) 306
TasI AATT 4 cut(s) 41, 251, 326, 412
Tru1I TTAA 3 cut(s) 126, 159, 266
Tru9I TTAA 3 cut(s) 126, 159, 266
TscAI CASTG 2 cut(s) 17, 385
TspDTI ATGAA 2 cut(s) 297, 319
TspRI CASTG 2 cut(s) 17, 385
VpaK11BI GGWCC 2 cut(s) 139, 154
XapI RAATTY 2 cut(s) 251, 326
XceI RCATGY 3 cut(s) 86, 229, 450
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.