Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000415

Physical Location & Seq

Genomic Coordinates Forward (+)

36996260 .. 36996649

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG146200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCCCGATGCCAATTATCCATGGTGTGATACTTGTTCAAGATACGCGGAAGCTGGAGACATTGGATTTTTGAACCTTGGTGATGGCCGGCAACTTTGCTCAGATTGTTCTTCAATAGCAGTCATGACTCGAGAGGAATGCAATTTCATAGTTCAAAATGTGCTTGAATTCTTTAGAAGCCTCAATCTTCAAGTGGATGAAAACATTCCTATTGTATTCGCCGACAGAAATCAGATGCGCAGTATATGGAGAGGTAATGGGCCTGAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

90

Amino Acids

10.24

Weight (kDa)

4.32

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica	MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica	Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata	RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora	Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii	Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa	Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha	Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana	Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	239
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	167
AgsI	TTSAA	6 cut(s)	39, 73, 114, 155, 167, 191
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	85, 260
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	129
BccI	CCATC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	260
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	20, 76
Bse118I	RCCGGY	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	20, 76
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	87, 262
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	87, 262
BsoBI	CYCGRG	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	2 cut(s)	87, 262
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	20, 76
BssT1I	CCWWGG	2 cut(s)	20, 76
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	87, 262
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	260
CviAII	CATG	2 cut(s)	21, 124
CviJI	RGCY	4 cut(s)	53, 87, 180, 262
CviKI_1	RGCY	4 cut(s)	53, 87, 180, 262
DdeI	CTNAG	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	20, 76
Eco88I	CYCGRG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	20, 76
ErhI	CCWWGG	2 cut(s)	20, 76
FaeI	CATG	2 cut(s)	24, 127
FaiI	YATR	5 cut(s)	22, 125, 149, 245, 247
FatI	CATG	2 cut(s)	20, 123
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	1 cut(s)	271
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	87, 262
HapII	CCGG	1 cut(s)	88
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	24, 127
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	103, 234
Hpy188III	TCNNGA	3 cut(s)	39, 124, 131
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	24, 127
HspAI	GCGC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	87
KroNI	GCCGGC	1 cut(s)	89
LpnPI	CCDG	2 cut(s)	39, 101
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	271
MboII	GAAGA	2 cut(s)	102, 179
MluCI	AATT	3 cut(s)	13, 142, 167
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	3 cut(s)	127, 191, 245
MroNI	GCCGGC	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	204
MspI	CCGG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	143
MvnI	CGCG	1 cut(s)	47
NaeI	GCCGGC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	20
NgoMIV	GCCGGC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	24, 127
NsbI	TGCGCA	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	123
PctI	GAATGC	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	260
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	121
SetI	ASST	3 cut(s)	55, 78, 256
SfaNI	GCATC	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	129
SlaI	CTCGAG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	13, 142, 167
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	20, 76
TaqI	TCGA	1 cut(s)	130
TasI	AATT	3 cut(s)	13, 142, 167
TspDTI	ATGAA	2 cut(s)	136, 213
XapI	RAATTY	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.