Rroxscaffold_7G00182850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000415
Physical Location & Seq
Forward (+)
21946880 .. 21955769
8890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182850.1

Sequence Viewer

Length: 537 bp
ATGGCTACTCAGTGTGGTGTCTGCAATGTATATTCTTTGTGTTTTCCTACGACCTTGATTTATTATGAGAGTGCAGCCCGTCCAGGCAAAGATACGATTGGTACCATATGGTACAAGGATAGCAGTTTGCTTGCTTGCACAACGATTAAGAAATGTTCAACAAGTGAAGGAATTATTAAGGTGAAGAAAAACACGAGAGAGGTTAACCCGACGTTGCAATTTATTAACCATGCGACGAAAAAGTTCAGTAAGGGCATTGATAATTTTGTTCGGTACACCGGTGTTTTCTATCTGCTTGCATTTTCAACAAACAAAGAACCTCACTTAAGAATACTCGTCTTGCATTTTCTAAGGTCTCGATTACCGCCTTTTGCCTACTTGATGCCTGATCTTCATAAGAAAACTATTGTCAATATTTTTCAACTTATAGTACCATACGATTCAGTTAACACGACTCCTTTTATGTCTACGTTTTCTTTTCTCACAGTGATAGCGAATCTAATGCCGTACCAGCAATGTCGTCAACAGGGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.31

Weight (kDa)

9.51

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 467
AciI CCGC 1 cut(s) 365
AfaI GTAC 5 cut(s) 103, 113, 275, 432, 509
AflII CTTAAG 1 cut(s) 325
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 3 cut(s) 159, 306, 422
AjnI CCWGG 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 74
AsiGI ACCGGT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 242
Asp718I GGTACC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BanI GGYRCC 1 cut(s) 101
BauI CACGAG 1 cut(s) 193
BbvI GCAGC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 325
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 278
Bse3DI GCAATG 2 cut(s) 31, 521
BseBI CCWGG 1 cut(s) 84
BseMI GCAATG 2 cut(s) 31, 521
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 278
BsiSI CCGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 360
Bsp143I GATC 1 cut(s) 388
BspACI CCGC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 31, 521
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssMI GATC 1 cut(s) 388
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 487
BstAFI CTTAAG 1 cut(s) 325
BstC8I GCNNGC 3 cut(s) 132, 136, 297
BstDEI CTNAG 2 cut(s) 9, 350
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 1 cut(s) 388
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 17, 492
Cac8I GCNNGC 3 cut(s) 132, 136, 297
Cfr10I RCCGGY 1 cut(s) 278
Csp6I GTAC 5 cut(s) 102, 112, 274, 431, 508
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 1 cut(s) 230
CviJI RGCY 2 cut(s) 5, 77
CviKI_1 RGCY 2 cut(s) 5, 77
CviQI GTAC 5 cut(s) 102, 112, 274, 431, 508
DdeI CTNAG 2 cut(s) 9, 350
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 233
FaiI YATR 9 cut(s) 31, 66, 107, 109, 231, 396, 428, 436, 464
FatI CATG 1 cut(s) 229
FauNDI CATATG 1 cut(s) 107
FblI GTMKAC 1 cut(s) 467
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HapII CCGG 1 cut(s) 279
Hin1II CATG 1 cut(s) 233
HincII GTYRAC 3 cut(s) 205, 448, 524
HindII GTYRAC 3 cut(s) 205, 448, 524
HinfI GANTC 3 cut(s) 440, 454, 496
HpaI GTTAAC 2 cut(s) 205, 448
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 5 cut(s) 205, 276, 448, 468, 524
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 5 cut(s) 205, 276, 448, 468, 524
Hpy99I CGWCG 2 cut(s) 214, 238
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 212, 470
HpyCH4V TGCA 6 cut(s) 24, 74, 138, 217, 299, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpyF3I CTNAG 2 cut(s) 9, 350
HpySE526I ACGT 2 cut(s) 212, 470
Hsp92II CATG 1 cut(s) 233
KpnI GGTACC 1 cut(s) 105
KspAI GTTAAC 2 cut(s) 205, 448
Kzo9I GATC 1 cut(s) 388
LpnPI CCDG 6 cut(s) 69, 96, 292, 399, 512, 524
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 372
MaeII ACGT 2 cut(s) 212, 470
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 2 cut(s) 196, 383
MluCI AATT 3 cut(s) 171, 218, 262
MlyI GAGTC 1 cut(s) 448
MnlI CCTC 2 cut(s) 193, 330
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 6 cut(s) 147, 177, 204, 225, 326, 447
MspCI CTTAAG 1 cut(s) 325
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 511
NdeI CATATG 1 cut(s) 107
NdeII GATC 1 cut(s) 388
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 440, 496
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 5 cut(s) 103, 113, 275, 432, 509
RsaNI GTAC 5 cut(s) 102, 112, 274, 431, 508
SaqAI TTAA 6 cut(s) 147, 177, 204, 225, 326, 447
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 388
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 84
SetI ASST 7 cut(s) 56, 183, 204, 215, 322, 356, 473
SfaNI GCATC 1 cut(s) 372
SgrAI CRCCGGYG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 3 cut(s) 171, 218, 262
SsiI CCGC 1 cut(s) 365
SspI AATATT 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 215, 473
TaqI TCGA 1 cut(s) 358
TasI AATT 3 cut(s) 171, 218, 262
TfiI GAWTC 2 cut(s) 440, 496
Tru1I TTAA 6 cut(s) 147, 177, 204, 225, 326, 447
Tru9I TTAA 6 cut(s) 147, 177, 204, 225, 326, 447
TscAI CASTG 2 cut(s) 17, 492
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 2 cut(s) 17, 492
Vha464I CTTAAG 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.