Rorug04G0221600

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000415
Physical Location & Seq
Reverse (-)
38105593 .. 38111671
6079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0221600.1

Sequence Viewer

Length: 1119 bp
ATGATTGTAGTAAGCATATTGATACTACTATTGTGCAAGCAGCTCTTGACTACTCTTGTGATTGATGTTAGAATTGTTGTAGTTGATGATAAGGTGATTGTTGAAAGTGCTGAAAAGATCGTGATGCAACTGATCAATATTGAGAAGAACAATCTGAACATAGCCAATGCTATGTTTGTTAACGAGATTGGGTCATTCACACGCAAATTAGCTCCACTCAAATTCAAATGGTGGAGAAAAGTACCTAAGGATGCCAAGAATGACATCAAAGAGGCTCTGACAACTAATTTCGAGTTTGATTGGACTGACTTGGAGCTGAGGATATTTGTGGAGAAGAAGATGGCCAAGGCATTTGGATCTTGGAGATCCAAGTTGCATGGACATTTTAAAAAGTATGCTCATGATTTAGAATATGCTCGAGCACACCCACCCGGAGAAAAGCTCTTTGGTGAAAGATCAATAGATGAATGGGAGTGGCTTTGTGACGAGCTATTCATAGATGAAACCTATGTGAAACGAAGTCAAGTTAATGCTGCAAATCGAAATCAGAAAGAGTATAATCATTGTGGAGGTTCACGGCCTTACCAAAAACATATGGAAGCTGCACTTAAGAAAGGTAAAAATGTGTCATTTGTTGAGAATTGGAGCACTATGCATCAACATCATGACGGTCAATGGATCAACAAAGCAGCTGAACAAACTGGGAAGAAAATGTTAGCAGAATTGAATCAAACAAAGGAGAAGTTAGCTGAAGTCCTTGGGACTGCCTCACTTGATGAAATAGAAGTTCCCGTCTCTATGCAGTTGGATATCTTGGCAAATGGCGTTGGGGTTGCAAAGGGTAGAGGCATTCGCGGTCTGGGCTATGGTCCACGGAAGGAACCCGTCCATTATTCTGAGAGTGATAAATCTGCAAATGCTTCCGTGACAGAACAAAATGTGATTGAGCTGACAGCCACGGTGGAAAAGCTTTTGAGGCATATCAATCACATAGAAGAGCAACTTGCTATTGTTGAAGGGTATACTATTCATCATTCCAGTGATGATGATGATGATTATGATAATGGGGATGATGATGAGGTGAATATCTGTGGGGATGAAGATGAGGGTGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

372

Amino Acids

42.33

Weight (kDa)

5.46

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 157 - 291 2.3e-11 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1022
AccII CGCG 1 cut(s) 855
AciI CCGC 1 cut(s) 855
AclWI GGATC 3 cut(s) 360, 364, 686
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 1 cut(s) 243
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 4 cut(s) 104, 226, 727, 1016
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
Alw21I GWGCWC 2 cut(s) 424, 650
Alw26I GTCTC 1 cut(s) 799
AlwI GGATC 3 cut(s) 360, 364, 686
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 2 cut(s) 342, 578
ApeKI GCWGC 4 cut(s) 40, 533, 602, 689
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 869
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 3 cut(s) 106, 461, 1093
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 1 cut(s) 869
AxyI CCTNAGG 1 cut(s) 246
BalI TGGCCA 1 cut(s) 344
Bbv12I GWGCWC 2 cut(s) 424, 650
BbvCI CCTCAGC 1 cut(s) 317
BbvI GCAGC 4 cut(s) 52, 520, 589, 701
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 593
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 799
BfaI CTAG 1 cut(s) 1117
BfrI CTTAAG 1 cut(s) 608
BisI GCNGC 4 cut(s) 41, 534, 603, 690
BlsI GCNGC 4 cut(s) 42, 535, 604, 691
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 869
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 869
BmiI GGNNCC 1 cut(s) 882
BmrFI CCNGG 1 cut(s) 432
BmrI ACTGGG 1 cut(s) 711
BmsI GCATC 3 cut(s) 114, 241, 664
BmuI ACTGGG 1 cut(s) 711
BplI GAGNNNNNCTC 2 cut(s) 426, 458
Bpu10I CCTNAGC 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 432
BsaJI CCNNGG 4 cut(s) 345, 757, 872, 957
Bse1I ACTGG 2 cut(s) 706, 1038
Bse21I CCTNAGG 1 cut(s) 246
BseDI CCNNGG 4 cut(s) 345, 757, 872, 957
BseGI GGATG 3 cut(s) 256, 1075, 1102
BseMII CTCAG 2 cut(s) 308, 888
BseNI ACTGG 2 cut(s) 706, 1038
BseXI GCAGC 4 cut(s) 52, 520, 589, 701
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 855
BshFI GGCC 2 cut(s) 344, 580
BsiHKAI GWGCWC 2 cut(s) 424, 650
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 775
BsmAI GTCTC 1 cut(s) 799
BsmBI CGTCTC 1 cut(s) 799
BsmFI GGGAC 1 cut(s) 775
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 2 cut(s) 344, 580
BsoBI CYCGRG 1 cut(s) 417
Bsp1286I GDGCHC 2 cut(s) 424, 650
Bsp143I GATC 6 cut(s) 117, 132, 356, 365, 455, 678
BspACI CCGC 1 cut(s) 855
BspANI GGCC 2 cut(s) 344, 580
BspCNI CTCAG 2 cut(s) 309, 889
BspFNI CGCG 1 cut(s) 855
BspHI TCATGA 2 cut(s) 400, 664
BspLI GGNNCC 1 cut(s) 882
BspPI GGATC 3 cut(s) 360, 364, 686
BspQI GCTCTTC 1 cut(s) 990
BspTI CTTAAG 1 cut(s) 608
BsrI ACTGG 2 cut(s) 706, 1038
BssECI CCNNGG 4 cut(s) 345, 757, 872, 957
BssMI GATC 6 cut(s) 117, 132, 356, 365, 455, 678
BssNAI GTATAC 1 cut(s) 1023
BssT1I CCWWGG 2 cut(s) 345, 757
Bst1107I GTATAC 1 cut(s) 1023
Bst4CI ACNGT 2 cut(s) 671, 961
Bst6I CTCTTC 1 cut(s) 990
BstAFI CTTAAG 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 246, 317, 897
BstDSI CCRYGG 2 cut(s) 872, 957
BstF5I GGATG 3 cut(s) 256, 1075, 1102
BstFNI CGCG 1 cut(s) 855
BstKTI GATC 6 cut(s) 120, 135, 359, 368, 458, 681
BstMAI GTCTC 1 cut(s) 799
BstMBI GATC 6 cut(s) 117, 132, 356, 365, 455, 678
BstMWI GCNNNNNNNGC 2 cut(s) 861, 976
BstSCI CCNGG 1 cut(s) 430
BstUI CGCG 1 cut(s) 855
BstV1I GCAGC 4 cut(s) 52, 520, 589, 701
BstX2I RGATCY 2 cut(s) 356, 365
BstYI RGATCY 2 cut(s) 356, 365
BstZ17I GTATAC 1 cut(s) 1023
Bsu36I CCTNAGG 1 cut(s) 246
BsuRI GGCC 2 cut(s) 344, 580
BtgI CCRYGG 2 cut(s) 872, 957
BtsCI GGATG 3 cut(s) 256, 1075, 1102
BtsIMutI CAGTG 1 cut(s) 1045
Cac8I GCNNGC 1 cut(s) 38
CciI TCATGA 2 cut(s) 400, 664
Cfr13I GGNCC 1 cut(s) 869
Csp6I GTAC 1 cut(s) 242
CviAII CATG 3 cut(s) 377, 401, 665
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 3 cut(s) 246, 317, 897
DpnI GATC 6 cut(s) 119, 134, 358, 367, 457, 680
DpnII GATC 6 cut(s) 117, 132, 356, 365, 455, 678
DraI TTTAAA 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 990
EarI CTCTTC 1 cut(s) 990
Eco130I CCWWGG 2 cut(s) 345, 757
Eco32I GATATC 1 cut(s) 811
Eco47I GGWCC 1 cut(s) 869
Eco57I CTGAAG 1 cut(s) 771
Eco81I CCTNAGG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 811
EcoT14I CCWWGG 2 cut(s) 345, 757
EcoT22I ATGCAT 1 cut(s) 657
ErhI CCWWGG 2 cut(s) 345, 757
Esp3I CGTCTC 1 cut(s) 799
FaeI CATG 3 cut(s) 380, 404, 668
FalI AAGNNNNNCTT 6 cut(s) 29, 61, 591, 623, 987, 1019
FaqI GGGAC 1 cut(s) 775
FatI CATG 3 cut(s) 376, 400, 664
FauNDI CATATG 1 cut(s) 594
FbaI TGATCA 1 cut(s) 132
FblI GTMKAC 1 cut(s) 1022
Fnu4HI GCNGC 4 cut(s) 41, 534, 603, 690
FokI GGATG 3 cut(s) 263, 1082, 1109
Fsp4HI GCNGC 4 cut(s) 41, 534, 603, 690
FspBI CTAG 1 cut(s) 1117
GluI GCNGC 4 cut(s) 41, 534, 603, 690
HaeIII GGCC 2 cut(s) 344, 580
HapII CCGG 1 cut(s) 432
Hin1II CATG 3 cut(s) 380, 404, 668
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 1 cut(s) 727
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 1 cut(s) 432
HphI GGTGA 3 cut(s) 106, 461, 1093
Hpy166II GTNNAC 4 cut(s) 181, 575, 872, 1023
Hpy188I TCNGA 4 cut(s) 156, 279, 549, 898
Hpy188III TCNNGA 4 cut(s) 46, 121, 401, 665
Hpy8I GTNNAC 4 cut(s) 181, 575, 872, 1023
HpyAV CCTTC 2 cut(s) 871, 1010
HpyCH4III ACNGT 2 cut(s) 671, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 861, 976
HpyF3I CTNAG 3 cut(s) 246, 317, 897
Hsp92II CATG 3 cut(s) 380, 404, 668
Ksp22I TGATCA 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 6 cut(s) 117, 132, 356, 365, 455, 678
LguI GCTCTTC 1 cut(s) 990
LmnI GCTCC 3 cut(s) 217, 313, 645
LpnPI CCDG 4 cut(s) 445, 687, 845, 1051
Lsp1109I GCAGC 4 cut(s) 52, 520, 589, 701
LweI GCATC 3 cut(s) 114, 241, 664
MaeI CTAG 1 cut(s) 1117
MaeIII GTNAC 2 cut(s) 482, 925
MalI GATC 6 cut(s) 119, 134, 358, 367, 457, 680
MboI GATC 6 cut(s) 117, 132, 356, 365, 455, 678
MboII GAAGA 6 cut(s) 157, 346, 349, 718, 1007, 1112
MflI RGATCY 2 cut(s) 356, 365
MhlI GDGCHC 2 cut(s) 424, 650
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 6 cut(s) 72, 206, 221, 286, 640, 722
MluNI TGGCCA 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 786
MnlI CCTC 8 cut(s) 265, 312, 563, 778, 839, 969, 1072, 1099
Mox20I TGGCCA 1 cut(s) 344
Mph1103I ATGCAT 1 cut(s) 657
MscI TGGCCA 1 cut(s) 344
MseI TTAA 4 cut(s) 180, 387, 528, 609
MslI CAYNNNNRTG 1 cut(s) 1038
Msp20I TGGCCA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 692
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 849
MvnI CGCG 1 cut(s) 855
MwoI GCNNNNNNNGC 2 cut(s) 861, 976
NciI CCSGG 1 cut(s) 432
NdeI CATATG 1 cut(s) 594
NdeII GATC 6 cut(s) 117, 132, 356, 365, 455, 678
NlaIII CATG 3 cut(s) 380, 404, 668
NlaIV GGNNCC 1 cut(s) 882
NmuCI GTSAC 2 cut(s) 482, 925
NsiI ATGCAT 1 cut(s) 657
PaeR7I CTCGAG 1 cut(s) 417
PagI TCATGA 2 cut(s) 400, 664
PciSI GCTCTTC 1 cut(s) 990
PctI GAATGC 1 cut(s) 849
PfeI GAWTC 1 cut(s) 727
PkrI GCNGC 4 cut(s) 42, 535, 604, 691
PspN4I GGNNCC 1 cut(s) 882
PspPI GGNCC 1 cut(s) 869
PspXI VCTCGAGB 1 cut(s) 417
PsuI RGATCY 2 cut(s) 356, 365
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 1038
SapI GCTCTTC 1 cut(s) 990
SaqAI TTAA 4 cut(s) 180, 387, 528, 609
SatI GCNGC 4 cut(s) 41, 534, 603, 690
Sau3AI GATC 6 cut(s) 117, 132, 356, 365, 455, 678
Sau96I GGNCC 1 cut(s) 869
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 2 cut(s) 424, 650
SfaNI GCATC 3 cut(s) 114, 241, 664
Sfr274I CTCGAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 869
SlaI CTCGAG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 1038
SmlI CTYRAG 2 cut(s) 417, 608
SmoI CTYRAG 2 cut(s) 417, 608
Sse9I AATT 6 cut(s) 72, 206, 221, 286, 640, 722
SsiI CCGC 1 cut(s) 855
SspI AATATT 1 cut(s) 139
SspMI CTAG 1 cut(s) 1117
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 2 cut(s) 345, 757
TaaI ACNGT 2 cut(s) 671, 961
TaqI TCGA 3 cut(s) 291, 418, 541
TasI AATT 6 cut(s) 72, 206, 221, 286, 640, 722
TfiI GAWTC 1 cut(s) 727
Tru1I TTAA 4 cut(s) 180, 387, 528, 609
Tru9I TTAA 4 cut(s) 180, 387, 528, 609
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 2 cut(s) 482, 925
TseI GCWGC 4 cut(s) 40, 533, 602, 689
Tsp45I GTSAC 2 cut(s) 482, 925
TspDTI ATGAA 6 cut(s) 480, 484, 516, 792, 1019, 1113
TspGWI ACGGA 2 cut(s) 889, 913
TspRI CASTG 1 cut(s) 1045
Vha464I CTTAAG 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 869
XapI RAATTY 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 1022
XspI CTAG 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.