Rmu_sc0001123.1_g000023

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001123.1
OG0000415
Physical Location & Seq
Reverse (-)
95196 .. 96729
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001123.1_g000023.1.cds

Sequence Viewer

Length: 702 bp
atgccattgggatgtgaaaataggactgaagaaggtatttgcgaagtaatgtcttacaaatggttgcagtggttttcttccagtggtcttgatacctcgcacaaaaccatacagcaagttcaatatacaagaaagctgaaagagttcttagtagaagaaattcggtgtcgagaagacgaagtttatggccaaggattcagagatgctatgcatgctgttgaaacatttggctttaaaaccacactagaccatgccgttaaaaatggaactctaccactacctatgatggatagtacacgctccactgccacagctgccgccgtcaccactaccaccaagaagttaataagaaagaataccagtgccaccccaataactcggttattatggaaggcgaccagcaatacaaccaaatcattatggaaggccacagctgccgcaataactgacttattatggaaggcggccaccacctacgaaacgccgcgcctgcctcagcctcagcctcagcctcacctcatctcacctcaccggccgaacctgcaaacccagcagcccagcctggccggcctcctccccagcgcccccgagcccagacgccgccacccgctactgcttttgcgcacccgcctgcgtaccagcccgcctgctcgctccctgcagccgcctgtacacctgcctaccacgccacagccgccgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

233

Amino Acids

26.21

Weight (kDa)

9.96

Isoelectric Point (pI)

62.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 684
Acc16I TGCGCA 1 cut(s) 623
Acc36I ACCTGC 2 cut(s) 549, 684
AccII CGCG 1 cut(s) 487
AcoI YGGCCR 4 cut(s) 187, 465, 533, 564
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 598
AfaI GTAC 3 cut(s) 295, 637, 672
AgsI TTSAA 2 cut(s) 122, 221
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 3 cut(s) 136, 314, 434
AluI AGCT 3 cut(s) 136, 314, 434
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 6 cut(s) 187, 426, 465, 533, 564, 568
ApeKI GCWGC 4 cut(s) 314, 434, 553, 661
ApoI RAATTY 1 cut(s) 159
Asp700I GAANNNNTTC 2 cut(s) 143, 159
AspLEI GCGC 3 cut(s) 489, 584, 624
AsuHPI GGTGA 4 cut(s) 316, 506, 516, 521
AvaI CYCGRG 1 cut(s) 587
BalI TGGCCA 1 cut(s) 189
BanII GRGCYC 1 cut(s) 594
BbsI GAAGAC 1 cut(s) 180
BbvCI CCTCAGC 3 cut(s) 495, 501, 507
BbvI GCAGC 4 cut(s) 301, 421, 565, 673
BccI CCATC 1 cut(s) 280
BceAI ACGGC 3 cut(s) 239, 305, 682
BciT130I CCWGG 1 cut(s) 563
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 659
BfoI RGCGCY 1 cut(s) 585
BfuAI ACCTGC 2 cut(s) 549, 684
BglI GCCNNNNNGGC 1 cut(s) 567
Bme1390I CCNGG 1 cut(s) 563
BmeT110I CYCGRG 1 cut(s) 587
BmrFI CCNGG 1 cut(s) 563
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 180
Bpu10I CCTNAGC 3 cut(s) 495, 501, 507
BsaHI GRCGYC 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 190
Bse118I RCCGGY 2 cut(s) 531, 566
Bse1I ACTGG 2 cut(s) 81, 360
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 17
BseMII CTCAG 3 cut(s) 509, 515, 521
BseNI ACTGG 2 cut(s) 81, 360
BseRI GAGGAG 1 cut(s) 563
BseX3I CGGCCG 1 cut(s) 533
BseXI GCAGC 4 cut(s) 301, 421, 565, 673
BseYI CCCAGC 3 cut(s) 549, 557, 578
Bsh1236I CGCG 1 cut(s) 487
Bsh1285I CGRYCG 1 cut(s) 536
BshFI GGCC 6 cut(s) 189, 428, 467, 535, 566, 570
BsiEI CGRYCG 1 cut(s) 536
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 2 cut(s) 532, 567
BsnI GGCC 6 cut(s) 189, 428, 467, 535, 566, 570
BsoBI CYCGRG 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 594
Bsp1407I TGTACA 1 cut(s) 670
BspANI GGCC 6 cut(s) 189, 428, 467, 535, 566, 570
BspCNI CTCAG 3 cut(s) 508, 514, 520
BspFNI CGCG 1 cut(s) 487
BspMAI CTGCAG 1 cut(s) 663
BspMI ACCTGC 2 cut(s) 549, 684
BsrFI RCCGGY 2 cut(s) 531, 566
BsrGI TGTACA 1 cut(s) 670
BsrI ACTGG 2 cut(s) 81, 360
BssAI RCCGGY 2 cut(s) 531, 566
BssECI CCNNGG 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 598
BssT1I CCWWGG 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 563
BstACI GRCGYC 1 cut(s) 598
BstAUI TGTACA 1 cut(s) 670
BstC8I GCNNGC 7 cut(s) 213, 491, 568, 632, 644, 648, 652
BstDEI CTNAG 4 cut(s) 148, 495, 501, 507
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 487
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 3 cut(s) 489, 584, 624
BstMCI CGRYCG 1 cut(s) 536
BstMWI GCNNNNNNNGC 9 cut(s) 212, 314, 434, 490, 541, 550, 567, 685, 694
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 561
BstSFI CTRYAG 1 cut(s) 659
BstUI CGCG 1 cut(s) 487
BstV1I GCAGC 4 cut(s) 301, 421, 565, 673
BstV2I GAAGAC 1 cut(s) 180
BstZI CGGCCG 1 cut(s) 533
BsuRI GGCC 6 cut(s) 189, 428, 467, 535, 566, 570
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 2 cut(s) 74, 303
BtsIMutI CAGTG 4 cut(s) 74, 88, 303, 367
BveI ACCTGC 2 cut(s) 549, 684
Cac8I GCNNGC 7 cut(s) 213, 491, 568, 632, 644, 648, 652
CfoI GCGC 3 cut(s) 489, 584, 624
Cfr10I RCCGGY 2 cut(s) 531, 566
CseI GACGC 1 cut(s) 606
Csp6I GTAC 3 cut(s) 294, 636, 671
CviAII CATG 2 cut(s) 212, 251
CviQI GTAC 3 cut(s) 294, 636, 671
DdeI CTNAG 4 cut(s) 148, 495, 501, 507
DraI TTTAAA 1 cut(s) 235
EaeI YGGCCR 4 cut(s) 187, 465, 533, 564
EagI CGGCCG 1 cut(s) 533
EclXI CGGCCG 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 594
Eco52I CGGCCG 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 561
EcoT14I CCWWGG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 215, 254
FatI CATG 2 cut(s) 211, 250
FauI CCCGC 3 cut(s) 615, 635, 651
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 594
FseI GGCCGGCC 1 cut(s) 570
FspBI CTAG 1 cut(s) 245
FspI TGCGCA 1 cut(s) 623
GlaI GCGC 3 cut(s) 488, 583, 623
GsaI CCCAGC 3 cut(s) 553, 561, 582
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 6 cut(s) 189, 428, 467, 535, 566, 570
HapII CCGG 2 cut(s) 532, 567
HgaI GACGC 1 cut(s) 606
HhaI GCGC 3 cut(s) 489, 584, 624
Hin1I GRCGYC 1 cut(s) 598
Hin1II CATG 2 cut(s) 215, 254
Hin6I GCGC 3 cut(s) 487, 582, 622
HinP1I GCGC 3 cut(s) 487, 582, 622
HinfI GANTC 1 cut(s) 195
HpaII CCGG 2 cut(s) 532, 567
HphI GGTGA 4 cut(s) 316, 506, 516, 521
Hpy166II GTNNAC 2 cut(s) 296, 673
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 2 cut(s) 89, 170
Hpy8I GTNNAC 2 cut(s) 296, 673
HpyAV CCTTC 4 cut(s) 26, 385, 418, 454
HpyCH4V TGCA 4 cut(s) 67, 211, 544, 661
HpyF10VI GCNNNNNNNGC 9 cut(s) 212, 314, 434, 490, 541, 550, 567, 685, 694
HpyF3I CTNAG 4 cut(s) 148, 495, 501, 507
Hsp92I GRCGYC 1 cut(s) 598
Hsp92II CATG 2 cut(s) 215, 254
HspAI GCGC 3 cut(s) 487, 582, 622
KroI GCCGGC 1 cut(s) 566
KroNI GCCGGC 1 cut(s) 568
LmnI GCTCC 2 cut(s) 305, 659
Lsp1109I GCAGC 4 cut(s) 301, 421, 565, 673
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 322
MboII GAAGA 4 cut(s) 41, 69, 167, 185
MhlI GDGCHC 1 cut(s) 594
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 1 cut(s) 159
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 9 cut(s) 106, 504, 510, 516, 522, 527, 537, 581, 584
Mox20I TGGCCA 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 213
MroNI GCCGGC 1 cut(s) 566
MroXI GAANNNNTTC 2 cut(s) 143, 159
MscI TGGCCA 1 cut(s) 189
MseI TTAA 3 cut(s) 234, 258, 344
MslI CAYNNNNRTG 1 cut(s) 10
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 2 cut(s) 314, 434
MspI CCGG 2 cut(s) 532, 567
MspR9I CCNGG 1 cut(s) 563
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 9 cut(s) 212, 314, 434, 490, 541, 550, 567, 685, 694
NaeI GCCGGC 1 cut(s) 568
NgoMIV GCCGGC 1 cut(s) 566
NlaIII CATG 2 cut(s) 215, 254
NmuCI GTSAC 1 cut(s) 322
NsbI TGCGCA 1 cut(s) 623
NsiI ATGCAT 1 cut(s) 213
NspI RCATGY 1 cut(s) 215
PaeI GCATGC 1 cut(s) 215
PaqCI CACCTGC 1 cut(s) 684
PdiI GCCGGC 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 143, 159
PfeI GAWTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 561
PspFI CCCAGC 3 cut(s) 549, 557, 578
PspGI CCWGG 1 cut(s) 561
PstI CTGCAG 1 cut(s) 663
PvuII CAGCTG 2 cut(s) 314, 434
RigI GGCCGGCC 1 cut(s) 570
RsaI GTAC 3 cut(s) 295, 637, 672
RsaNI GTAC 3 cut(s) 294, 636, 671
RseI CAYNNNNRTG 1 cut(s) 10
SaqAI TTAA 3 cut(s) 234, 258, 344
ScrFI CCNGG 1 cut(s) 563
SduI GDGCHC 1 cut(s) 594
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 659
SmiMI CAYNNNNRTG 1 cut(s) 10
SphI GCATGC 1 cut(s) 215
Sse9I AATT 1 cut(s) 159
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 561
StyI CCWWGG 1 cut(s) 190
TaqI TCGA 1 cut(s) 169
TasI AATT 1 cut(s) 159
TatI WGTACW 2 cut(s) 293, 670
TauI GCSGC 7 cut(s) 320, 440, 467, 487, 603, 667, 697
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 3 cut(s) 234, 258, 344
Tru9I TTAA 3 cut(s) 234, 258, 344
TscAI CASTG 4 cut(s) 74, 88, 310, 367
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 4 cut(s) 314, 434, 553, 661
Tsp45I GTSAC 1 cut(s) 322
TspRI CASTG 4 cut(s) 74, 88, 310, 367
XapI RAATTY 1 cut(s) 159
XceI RCATGY 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 143, 159
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.