RchiOBHm_Chr4g0407711

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000415
Physical Location & Seq
Forward (+)
30059750 .. 30060542
793 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37893

Sequence Viewer

Length: 672 bp
ATGGGAGGATTGTTGGCACATGAGATGATGCATGGATGGTTGTATCTTCAAGGTAAACCATGGGAACGGGAACGAAGCGTTGAAGAAGGTATTTGCCAAGTAATGTATTACAAATGGTTGCAATGGTTTTCTTCTAGAGGTTATAACTCTTCGCACAAAACCAATGAGCAAGTTCAACATACAAGAATGTTGAAAGAGTACTTGGCACAGGAGATTGAGTGTTGGAATGATGAAGTTTATGGTCAAGGATTCATAAATGCTATGCGAGCTATTGAAATATTTGGATTCAAAACTACGGTGGATCATATCGTCAAAGATGGAACTCTCCCTGTGGTTCCACCGGTTGCCCCGGTTGTGATGGGGAAGAAGAAGAAGACCACCACCACCACTGAGTTAACGAGGAAGAAGACCACCTGTGCCCTAATAACTGAGCTGTTATGGAAGGCGACTAGCAACACAACTAAATCATTATGGAAGGCCACAGCTGCAACAATTACCAACTTATTATGGAAGGTCACAGCCGCCTGTGAAACACCGCGATTTGTTACTATGGAAGGACACCGCCACCACCAGTATCATCAGGGACAAAGCCATAACAACTTACATGTTCCCATGGCCGCATCTCCTACTCTCCTTCTTGTATTTATTGGGATATTAATCGAACACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

223

Amino Acids

25.58

Weight (kDa)

9.11

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 2 - 104 1.3e-22 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AccII CGCG 1 cut(s) 538
AciI CCGC 4 cut(s) 522, 536, 562, 618
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 615
AfaI GTAC 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 604
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 6 cut(s) 50, 83, 176, 193, 275, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 3 cut(s) 269, 433, 485
AluI AGCT 3 cut(s) 269, 433, 485
AlwI GGATC 1 cut(s) 309
AoxI GGCC 2 cut(s) 477, 615
ApeKI GCWGC 1 cut(s) 485
AseI ATTAAT 1 cut(s) 656
AsiGI ACCGGT 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 421
BbsI GAAGAC 2 cut(s) 380, 413
BbvI GCAGC 1 cut(s) 472
BccI CCATC 3 cut(s) 30, 311, 352
BcnI CCSGG 1 cut(s) 350
BfaI CTAG 2 cut(s) 135, 450
BisI GCNGC 3 cut(s) 486, 522, 618
BlsI GCNGC 3 cut(s) 487, 523, 619
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 2 cut(s) 18, 629
BpiI GAAGAC 2 cut(s) 380, 413
BpuMI CCSGG 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 656
BsaJI CCNNGG 3 cut(s) 59, 348, 612
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 656
BseDI CCNNGG 3 cut(s) 59, 348, 612
BseGI GGATG 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 656
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 381, 420
BseNI ACTGG 1 cut(s) 571
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 538
BshFI GGCC 2 cut(s) 479, 617
BshTI ACCGGT 1 cut(s) 340
BsiSI CCGG 2 cut(s) 341, 350
BslFI GGGAC 1 cut(s) 597
BsmFI GGGAC 1 cut(s) 597
BsnI GGCC 2 cut(s) 479, 617
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 1 cut(s) 301
Bsp19I CCATGG 2 cut(s) 59, 612
BspACI CCGC 4 cut(s) 522, 536, 562, 618
BspANI GGCC 2 cut(s) 479, 617
BspCNI CTCAG 2 cut(s) 382, 421
BspFNI CGCG 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 1 cut(s) 571
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 59, 348, 612
BssMI GATC 1 cut(s) 301
BssT1I CCWWGG 2 cut(s) 59, 612
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 390, 429
BstDSI CCRYGG 2 cut(s) 59, 612
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 538
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 266, 485
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 421
BstUI CGCG 1 cut(s) 538
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 2 cut(s) 380, 413
BsuRI GGCC 2 cut(s) 479, 617
BtgI CCRYGG 2 cut(s) 59, 612
BtsCI GGATG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 340
Csp6I GTAC 1 cut(s) 199
CspAI ACCGGT 1 cut(s) 340
CviAII CATG 5 cut(s) 20, 32, 60, 605, 613
CviJI RGCY 7 cut(s) 269, 433, 479, 485, 521, 591, 617
CviKI_1 RGCY 7 cut(s) 269, 433, 479, 485, 521, 591, 617
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 2 cut(s) 390, 429
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 59, 612
EcoT14I CCWWGG 2 cut(s) 59, 612
EcoT22I ATGCAT 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 59, 612
FaeI CATG 5 cut(s) 23, 35, 63, 608, 616
FaqI GGGAC 1 cut(s) 597
FatI CATG 5 cut(s) 19, 31, 59, 604, 612
Fnu4HI GCNGC 3 cut(s) 486, 522, 618
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 3 cut(s) 486, 522, 618
FspBI CTAG 2 cut(s) 135, 450
GluI GCNGC 3 cut(s) 486, 522, 618
HaeIII GGCC 2 cut(s) 479, 617
HapII CCGG 2 cut(s) 341, 350
Hin1II CATG 5 cut(s) 23, 35, 63, 608, 616
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 2 cut(s) 249, 285
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 2 cut(s) 341, 350
Hpy166II GTNNAC 2 cut(s) 56, 396
Hpy188III TCNNGA 1 cut(s) 135
Hpy8I GTNNAC 2 cut(s) 56, 396
HpyAV CCTTC 6 cut(s) 80, 436, 469, 505, 548, 644
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 31, 121, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 485
HpyF3I CTNAG 2 cut(s) 390, 429
Hsp92II CATG 5 cut(s) 23, 35, 63, 608, 616
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 301
LpnPI CCDG 8 cut(s) 194, 342, 354, 363, 427, 538, 566, 584
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 2 cut(s) 18, 629
MaeI CTAG 2 cut(s) 135, 450
MaeIII GTNAC 2 cut(s) 514, 544
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 1 cut(s) 492
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 2 cut(s) 131, 393
Mph1103I ATGCAT 1 cut(s) 33
MseI TTAA 2 cut(s) 395, 656
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 2 cut(s) 341, 350
MspR9I CCNGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 538
MwoI GCNNNNNNNGC 2 cut(s) 266, 485
NciI CCSGG 1 cut(s) 350
NcoI CCATGG 2 cut(s) 59, 612
NdeII GATC 1 cut(s) 301
NlaIII CATG 5 cut(s) 23, 35, 63, 608, 616
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 514
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 1 cut(s) 608
PciI ACATGT 1 cut(s) 604
PfeI GAWTC 2 cut(s) 249, 285
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 3 cut(s) 487, 523, 619
PscI ACATGT 1 cut(s) 604
PshBI ATTAAT 1 cut(s) 656
PsiI TTATAA 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 395, 656
SatI GCNGC 3 cut(s) 486, 522, 618
Sau3AI GATC 1 cut(s) 301
ScaI AGTACT 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 421
SetI ASST 8 cut(s) 55, 91, 142, 271, 416, 435, 487, 516
SfaNI GCATC 2 cut(s) 18, 629
Sse9I AATT 1 cut(s) 492
SsiI CCGC 4 cut(s) 522, 536, 562, 618
SspI AATATT 1 cut(s) 279
SspMI CTAG 2 cut(s) 135, 450
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 2 cut(s) 59, 612
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 660
TasI AATT 1 cut(s) 492
TatI WGTACW 1 cut(s) 198
TauI GCSGC 2 cut(s) 524, 620
TfiI GAWTC 2 cut(s) 249, 285
Tru1I TTAA 2 cut(s) 395, 656
Tru9I TTAA 2 cut(s) 395, 656
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 2 cut(s) 241, 246
TspRI CASTG 1 cut(s) 394
VspI ATTAAT 1 cut(s) 656
XbaI TCTAGA 1 cut(s) 134
XceI RCATGY 1 cut(s) 608
XspI CTAG 2 cut(s) 135, 450
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.