RchiOBHm_Chr6g0285691

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000415
Physical Location & Seq
Reverse (-)
49006790 .. 49007645
856 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25627

Sequence Viewer

Length: 381 bp
ATGGGTGAAACAATGGCACATGAGATGATGCATGCATGGTTTTACCTTCAAGGTTGTAGAGGGAAATTGGAAAGAAGTGTTGAAGAAGGCATTTGCAGTTTAATGGGATACATGTGGATGGAGTGGTTTTGTACTAGTGGTGTTGACTCCTTTTACAAAACCAGTGTACAAGTTCAATATACAAAAGACTTGAAAGATTATACGGCGCATTGTATGGAACTTAATCAAGACAAAATTTATGGCCAAGGATTTAGAGATGCTATCAAGGCTGTTAGCAAGTTTGGCTTCAACTATACAGTGGACTATATCGTCAAGAACAAATGCCTCCCTTGTGAAATGGATCCAGCTCCTCTGCAGTGCAGAGGGTGTGCAGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

126

Amino Acids

14.57

Weight (kDa)

5.88

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 2 - 104 9e-24 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AclWI GGATC 2 cut(s) 335, 348
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 234
AfaI GTAC 2 cut(s) 133, 168
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 5 cut(s) 50, 83, 176, 193, 289
AhlI ACTAGT 1 cut(s) 134
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
AlwI GGATC 2 cut(s) 335, 348
AoxI GGCC 1 cut(s) 241
ApoI RAATTY 1 cut(s) 234
AspLEI GCGC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 17
BalI TGGCCA 1 cut(s) 243
BamHI GGATCC 1 cut(s) 340
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 219
BciVI GTATCC 1 cut(s) 101
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 353
BfuI GTATCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 2 cut(s) 18, 247
BsaJI CCNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 339
BsgI GTGCAG 1 cut(s) 379
BshFI GGCC 1 cut(s) 243
BsnI GGCC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 1 cut(s) 340
BspANI GGCC 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 342
BspMAI CTGCAG 1 cut(s) 357
BspPI GGATC 2 cut(s) 335, 348
BsrGI TGTACA 1 cut(s) 166
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 298
BstAUI TGTACA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 33
BstF5I GGATG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 343
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 266, 282
BstNSI RCATGY 2 cut(s) 35, 115
BstSFI CTRYAG 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 123
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 3 cut(s) 169, 303, 362
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 132, 167
CviAII CATG 4 cut(s) 20, 32, 36, 112
CviJI RGCY 4 cut(s) 243, 269, 285, 347
CviKI_1 RGCY 4 cut(s) 243, 269, 285, 347
CviQI GTAC 2 cut(s) 132, 167
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 2 cut(s) 33, 37
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 23, 35, 39, 115
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FatI CATG 4 cut(s) 19, 31, 35, 111
FokI GGATG 1 cut(s) 130
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 243
HhaI GCGC 1 cut(s) 208
Hin1II CATG 4 cut(s) 23, 35, 39, 115
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 145, 167, 301
Hpy188III TCNNGA 2 cut(s) 227, 313
Hpy8I GTNNAC 3 cut(s) 145, 167, 301
HpyAV CCTTC 2 cut(s) 56, 80
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 6 cut(s) 31, 35, 96, 355, 360, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 282
Hsp92II CATG 4 cut(s) 23, 35, 39, 115
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 1 cut(s) 340
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 2 cut(s) 175, 357
LweI GCATC 2 cut(s) 18, 247
MaeI CTAG 1 cut(s) 135
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 1 cut(s) 95
MflI RGATCY 1 cut(s) 340
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 2 cut(s) 65, 234
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 4 cut(s) 53, 335, 356, 360
Mox20I TGGCCA 1 cut(s) 243
Mph1103I ATGCAT 2 cut(s) 33, 37
MscI TGGCCA 1 cut(s) 243
MseI TTAA 2 cut(s) 101, 222
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 266, 282
NdeII GATC 1 cut(s) 340
NlaIII CATG 4 cut(s) 23, 35, 39, 115
NlaIV GGNNCC 1 cut(s) 342
NsiI ATGCAT 2 cut(s) 33, 37
NspI RCATGY 2 cut(s) 35, 115
PaeI GCATGC 1 cut(s) 35
PciI ACATGT 1 cut(s) 111
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 342
PstI CTGCAG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 2 cut(s) 133, 168
RsaNI GTAC 2 cut(s) 132, 167
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 101, 222
Sau3AI GATC 1 cut(s) 340
SchI GAGTC 1 cut(s) 140
SetI ASST 3 cut(s) 48, 55, 349
SfaNI GCATC 2 cut(s) 18, 247
SfcI CTRYAG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 134
SphI GCATGC 1 cut(s) 35
Sse9I AATT 2 cut(s) 65, 234
SspMI CTAG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 298
TasI AATT 2 cut(s) 65, 234
TatI WGTACW 2 cut(s) 131, 166
Tru1I TTAA 2 cut(s) 101, 222
Tru9I TTAA 2 cut(s) 101, 222
TscAI CASTG 3 cut(s) 169, 303, 362
TspRI CASTG 3 cut(s) 169, 303, 362
XapI RAATTY 1 cut(s) 234
XceI RCATGY 2 cut(s) 35, 115
XspI CTAG 1 cut(s) 135
Zsp2I ATGCAT 2 cut(s) 33, 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.