RLG00000012616

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000415
Physical Location & Seq
Forward (+)
20527923 .. 20530253
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012616

Sequence Viewer

Length: 546 bp
ATGCCTCTGATGGGACTCTCAGGTGTTATACCTGTCATAGATTTAAGGACCTTGATTTATTATGAGAGTGCAGCCTGTGCAGGCAAAGATACGATTGGTACCATATGGTACAAGGATAGCAGTTTGCGTGCTTGCACAACGATTAAGAAATGTTCAACAAGTGAAGGAATTATTAAGGTGGAGAAAAACACAGAGAGAGTCCGCATAGGTGCAACAATGGCACATGAGATGATGCATGCATGGTTTTACCTTCAAGGTTGTAGAGGGAAATTGGAAAGAAGTGTTGAAGAAGGTATTTGCAGATTAATGGGATACATGTGGATGGAGTGGTTTTGTTCTGGTGGTGTTGACTCCTTTTACAAAACCAGTGTACAAGTTCAACATACAAAAGACTTGAAAGATTATATAGCGCATTGTATGGAACTTAGTCAAGACAAAATTTATGGCCAAGGATTTAGAGATGCTATCAAGGCTGTTAGCAAGTTTGGCTTCAACTATACAGTGGACTATATCGTCAAGAACAAATGCCTCCCTTGTGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

182

Amino Acids

20.59

Weight (kDa)

8.32

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 66 - 172 3.3e-24 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 512
Acc65I GGTACC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 2 cut(s) 438, 540
AfaI GTAC 3 cut(s) 100, 110, 372
AfiI CCNNNNNNNGG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 6 cut(s) 156, 254, 287, 380, 397, 493
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 438, 540
AseI ATTAAT 1 cut(s) 305
Asp718I GGTACC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 48
AvaII GGWCC 1 cut(s) 48
BalI TGGCCA 1 cut(s) 447
BanI GGYRCC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 4, 316
BciVI GTATCC 1 cut(s) 305
BfuI GTATCC 1 cut(s) 305
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 2 cut(s) 222, 451
BsaJI CCNNGG 1 cut(s) 448
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 83
BsgI GTGCAG 2 cut(s) 90, 99
BshFI GGCC 1 cut(s) 447
BshNI GGYRCC 1 cut(s) 98
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 1 cut(s) 447
Bsp1407I TGTACA 1 cut(s) 370
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 448
Bst4CI ACNGT 1 cut(s) 502
BstAPI GCANNNNNTGC 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 370
BstC8I GCNNGC 4 cut(s) 82, 129, 133, 237
BstDEI CTNAG 2 cut(s) 19, 425
BstF5I GGATG 1 cut(s) 327
BstHHI GCGC 1 cut(s) 412
BstMWI GCNNNNNNNGC 4 cut(s) 77, 218, 470, 486
BstNSI RCATGY 2 cut(s) 239, 319
BstV1I GCAGC 1 cut(s) 83
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 373, 507
Cac8I GCNNGC 4 cut(s) 82, 129, 133, 237
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 3 cut(s) 99, 109, 371
CviAII CATG 4 cut(s) 224, 236, 240, 316
CviJI RGCY 4 cut(s) 74, 447, 473, 489
CviKI_1 RGCY 4 cut(s) 74, 447, 473, 489
CviQI GTAC 3 cut(s) 99, 109, 371
DdeI CTNAG 2 cut(s) 19, 425
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 448
EcoT22I ATGCAT 2 cut(s) 237, 241
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 4 cut(s) 227, 239, 243, 319
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 1 cut(s) 27
FatI CATG 4 cut(s) 223, 235, 239, 315
FauNDI CATATG 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 72
GlaI GCGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 447
HhaI GCGC 1 cut(s) 412
Hin1II CATG 4 cut(s) 227, 239, 243, 319
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 3 cut(s) 15, 198, 350
Hpy166II GTNNAC 3 cut(s) 349, 371, 505
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 431, 517
Hpy8I GTNNAC 3 cut(s) 349, 371, 505
HpyAV CCTTC 3 cut(s) 158, 260, 284
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4V TGCA 7 cut(s) 71, 80, 135, 212, 235, 239, 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 218, 470, 486
HpyF3I CTNAG 2 cut(s) 19, 425
Hsp92II CATG 4 cut(s) 227, 239, 243, 319
HspAI GCGC 1 cut(s) 410
KpnI GGTACC 1 cut(s) 102
LpnPI CCDG 6 cut(s) 6, 45, 66, 88, 324, 379
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 2 cut(s) 222, 451
MboII GAAGA 1 cut(s) 299
MlsI TGGCCA 1 cut(s) 447
MluCI AATT 4 cut(s) 168, 269, 438, 540
MluNI TGGCCA 1 cut(s) 447
MlyI GAGTC 3 cut(s) 9, 207, 344
MnlI CCTC 3 cut(s) 15, 257, 539
Mox20I TGGCCA 1 cut(s) 447
Mph1103I ATGCAT 2 cut(s) 237, 241
MscI TGGCCA 1 cut(s) 447
MseI TTAA 5 cut(s) 44, 144, 174, 305, 544
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 447
MwoI GCNNNNNNNGC 4 cut(s) 77, 218, 470, 486
NdeI CATATG 1 cut(s) 104
NlaIII CATG 4 cut(s) 227, 239, 243, 319
NlaIV GGNNCC 1 cut(s) 100
NsiI ATGCAT 2 cut(s) 237, 241
NspI RCATGY 2 cut(s) 239, 319
PaeI GCATGC 1 cut(s) 239
PciI ACATGT 1 cut(s) 315
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 3 cut(s) 9, 206, 344
PpsI GAGTC 3 cut(s) 9, 206, 344
PpuMI RGGWCCY 1 cut(s) 48
PscI ACATGT 1 cut(s) 315
PshBI ATTAAT 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 48
PspPPI RGGWCCY 1 cut(s) 48
RsaI GTAC 3 cut(s) 100, 110, 372
RsaNI GTAC 3 cut(s) 99, 109, 371
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 5 cut(s) 44, 144, 174, 305, 544
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 3 cut(s) 9, 207, 344
SetI ASST 8 cut(s) 25, 34, 53, 180, 211, 252, 259, 295
SfaNI GCATC 2 cut(s) 222, 451
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 320
SphI GCATGC 1 cut(s) 239
Sse9I AATT 4 cut(s) 168, 269, 438, 540
SsiI CCGC 1 cut(s) 202
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 1 cut(s) 502
TasI AATT 4 cut(s) 168, 269, 438, 540
TatI WGTACW 1 cut(s) 370
Tru1I TTAA 5 cut(s) 44, 144, 174, 305, 544
Tru9I TTAA 5 cut(s) 44, 144, 174, 305, 544
TscAI CASTG 2 cut(s) 373, 507
TseI GCWGC 1 cut(s) 71
TspRI CASTG 2 cut(s) 373, 507
VpaK11BI GGWCC 1 cut(s) 48
VspI ATTAAT 1 cut(s) 305
XapI RAATTY 2 cut(s) 438, 540
XceI RCATGY 2 cut(s) 239, 319
Zsp2I ATGCAT 2 cut(s) 237, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.