Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000600.1

Orthogroup ID

OG0000415

Physical Location & Seq

Genomic Coordinates Forward (+)

257326 .. 257874

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000600.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggaagtttggctgtgggctcaaacagactctgatgaagtgaagcatcatacgagtatgcccgatgccaatgatccatggtgtgatacttgtacaagatacgcggaagctggagacactggatttttgaaccttggtgatggccggcaactttgctcagattgttcttcaatagcagtcatgactcgagaggaatgcaattgcatagttcaaaatgtgcttgaattctttagaagcctcaatcttcaagtggatgaaaacattcctattgtattcgccgacagaaatcagatgcgcagtatatggagaggtaatgggccagaactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

109

Amino Acids

12.43

Weight (kDa)

4.34

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica	MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica	Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata	RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora	Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii	Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa	Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha	Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana	Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	296
AccII	CGCG	1 cut(s)	104
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	1 cut(s)	94
AgsI	TTSAA	5 cut(s)	130, 171, 212, 224, 248
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	2 cut(s)	142, 317
ApoI	RAATTY	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	22
BccI	CCATC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	317
BmsI	GCATC	3 cut(s)	55, 55, 282
BpmI	CTGGAG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	77, 133
Bse118I	RCCGGY	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	77, 133
BseGI	GGATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	144, 319
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	144, 319
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	73
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	144, 319
BspCNI	CTCAG	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	104
BspHI	TCATGA	1 cut(s)	180
BspPI	GGATC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	77, 133
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	2 cut(s)	77, 133
BstAUI	TGTACA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	73
BstUI	CGCG	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	144, 319
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	2 cut(s)	78, 181
CviJI	RGCY	6 cut(s)	13, 20, 110, 144, 237, 319
CviKI_1	RGCY	6 cut(s)	13, 20, 110, 144, 237, 319
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	77, 133
Eco24I	GRGCYC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	77, 133
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	77, 133
FaeI	CATG	2 cut(s)	81, 184
FaiI	YATR	7 cut(s)	51, 59, 79, 182, 206, 302, 304
FatI	CATG	2 cut(s)	77, 180
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	328
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	144, 319
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	81, 184
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	29, 184
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	3 cut(s)	34, 160, 291
Hpy188III	TCNNGA	2 cut(s)	181, 188
HpyCH4V	TGCA	2 cut(s)	198, 204
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	81, 184
HspAI	GCGC	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	144
KroNI	GCCGGC	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	3 cut(s)	96, 105, 158
LweI	GCATC	3 cut(s)	55, 55, 282
MaeI	CTAG	1 cut(s)	328
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	2 cut(s)	159, 236
MfeI	CAATTG	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	199, 224
MlyI	GAGTC	2 cut(s)	23, 178
MnlI	CCTC	3 cut(s)	184, 248, 302
MroNI	GCCGGC	1 cut(s)	144
MroXI	GAANNNNTTC	1 cut(s)	261
MspI	CCGG	1 cut(s)	145
MunI	CAATTG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	200
MvnI	CGCG	1 cut(s)	104
NaeI	GCCGGC	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	144
NlaIII	CATG	2 cut(s)	81, 184
NsbI	TGCGCA	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	186
PagI	TCATGA	1 cut(s)	180
PctI	GAATGC	1 cut(s)	200
PdiI	GCCGGC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	261
PleI	GAGTC	2 cut(s)	23, 178
PpsI	GAGTC	2 cut(s)	23, 178
PspPI	GGNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	2 cut(s)	23, 178
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	3 cut(s)	112, 135, 313
SfaNI	GCATC	3 cut(s)	55, 55, 282
Sfr274I	CTCGAG	1 cut(s)	186
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	199, 224
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	328
StyI	CCWWGG	2 cut(s)	77, 133
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	199, 224
TatI	WGTACW	1 cut(s)	92
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	51, 270
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.