Rh6CG016700

actinin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000415
Physical Location & Seq
Reverse (-)
1751775 .. 1752344
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG016700.1

Sequence Viewer

Length: 267 bp
ATGGGAGCGACCTTGGCACATGGGTTCATGCACGCATGGTTGAAGCTTCAAGGTTCTCCAGAACTATTGGAAAGGTCAGTGGAAGAAGGTATTTGTCAAGTAATGGCACACATGTGGATGAGATGGTTTCACTCTAGTTATGATCTTGACTCTGCATACAAGACGAATAAGCAGGCTCAAGTTACAAAAGATTTGAAAGAATTTGAGACATGGAGCATGACAACCTGGGATAATGAAATTTATGGTGAAGATTCAGGGAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000131 GO:0000278 GO:0000281 GO:0000746 GO:0000747 GO:0000755 GO:0000910 GO:0000917 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005933 GO:0005934 GO:0005935 GO:0005937 GO:0006109 GO:0006996 GO:0007010 GO:0007049 GO:0008047 GO:0008150 GO:0008360 GO:0009272 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010556 GO:0010646 GO:0010648 GO:0010675 GO:0010962 GO:0010981 GO:0016043 GO:0019222 GO:0019904 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0023051 GO:0023057 GO:0030016 GO:0030017 GO:0030029 GO:0030036 GO:0030234 GO:0030427 GO:0030695 GO:0031323 GO:0031326 GO:0031430 GO:0031672 GO:0032505 GO:0032506 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032952 GO:0032953 GO:0032995 GO:0035023 GO:0035024 GO:0042546 GO:0042995 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043255 GO:0043292 GO:0043332 GO:0043547 GO:0044085 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0046578 GO:0046580 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051056 GO:0051058 GO:0051128 GO:0051179 GO:0051286 GO:0051301 GO:0051336 GO:0051345 GO:0051641 GO:0051666 GO:0051704 GO:0055120 GO:0060237 GO:0060255 GO:0060589 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071840 GO:0071852 GO:0080090 GO:0090036 GO:0090038 GO:0090334 GO:0090529 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120038 GO:1902410 GO:1902531 GO:1902532 GO:1903047 GO:1903338 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM RhoGAP

Protein Analysis

88

Amino Acids

10.29

Weight (kDa)

5.19

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 2 - 83 3.1e-18 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 200, 237
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 3 cut(s) 43, 50, 196
AjnI CCWGG 1 cut(s) 224
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 200
ApoI RAATTY 2 cut(s) 200, 237
AsuHPI GGTGA 1 cut(s) 257
BccI CCATC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 12, 225
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 12, 225
BseGI GGATG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 12, 225
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 33, 174
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 33, 174
CviAII CATG 6 cut(s) 20, 28, 36, 112, 210, 217
CviJI RGCY 3 cut(s) 46, 176, 262
CviKI_1 RGCY 3 cut(s) 46, 176, 262
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 6 cut(s) 23, 31, 39, 115, 213, 220
FatI CATG 6 cut(s) 19, 27, 35, 111, 209, 216
FokI GGATG 1 cut(s) 130
FspBI CTAG 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 42
Hin1II CATG 6 cut(s) 23, 31, 39, 115, 213, 220
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 149, 251
HphI GGTGA 1 cut(s) 257
Hpy188III TCNNGA 2 cut(s) 59, 146
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 31, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 23, 31, 39, 115, 213, 220
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 5, 213
LpnPI CCDG 5 cut(s) 72, 158, 211, 238, 240
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 95, 260
MluCI AATT 2 cut(s) 200, 237
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 1 cut(s) 252
MslI CAYNNNNRTG 2 cut(s) 112, 116
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 1 cut(s) 142
NlaIII CATG 6 cut(s) 23, 31, 39, 115, 213, 220
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 112
PciI ACATGT 1 cut(s) 111
PfeI GAWTC 1 cut(s) 251
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PscI ACATGT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
RseI CAYNNNNRTG 2 cut(s) 112, 116
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 226
SetI ASST 6 cut(s) 14, 48, 55, 77, 91, 227
SmiMI CAYNNNNRTG 2 cut(s) 112, 116
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 200, 237
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 12
TasI AATT 2 cut(s) 200, 237
TfiI GAWTC 1 cut(s) 251
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 16, 249
TspRI CASTG 1 cut(s) 84
XapI RAATTY 2 cut(s) 200, 237
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.