Rh3DG144300

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000415
Physical Location & Seq
Reverse (-)
12320798 .. 12340958
20161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG144300.1

Sequence Viewer

Length: 843 bp
ATGACGGTCTATGTGCAGCAAGCTGGAGATCAATATTTGGACTTAGGTGACGGCCGATTAGCTTGCTCAGATTGCTCCTCCATAACTATTATGGATCCGAAGGACTTCAAGCCCCTTATTGAAATGGTGCATAAATTTTATAGAAGCTTAAATCTCAAATTAGTTGAAAACATATCTGTATTATTGGCAGATAGACATGAGATTTACAAGCTTTGCATCAGCAAGGGTACGCTTGACGTAGGTACAGAAGTACTTGGCTTAACAATATATGGTGTCCTTACTTCCATCAGACGGATTAAAAAATGTTCAAATTATGGAGGGAATATTAAAGTGGGGAGAAAAGTCAAGATGCTCTTTGCAAAAAGCTTAGCATTCAGATTTGGGTACAGAAAAGCGATGGTGGTTCTACTTCTGTTTGGCCGACCAGATGTGCTGATGGGTGGAGCTTTGGCACATGAAATGATGCATACATGGTTGGAGCTTCAAGTGGGACGTGGGATATTGGAAAAAAGAGTTGAAGAAGGTATTTGTGAAGTCATGAATTACATGTGGATGGAATGGTTTTGTGCTAATGAAGGTGTTGAGTGCTACTCGTGCTACTCCTATAAAACTGACGAGCAAGCTGAGTTTACAAGAAAGTTGAAGGAGTTCTACCAACAGCGAATGGAACGCAGTGAAGACGAATGTTATGGCCAAGGGTTCAGAGACGCTATGTGGGCAGTGCAAATATTTGGCCTCGAAACTACACTAGAACATATTGTTCAAAAAAGGAGCCTTCCTGAATCAATGAGAAGGTTGCAAACGGCAAACAACGCGGATTTTAAGGCAGCACGCAATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

280

Amino Acids

32.28

Weight (kDa)

8.29

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 50 - 254 1.4e-36 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 815
AciI CCGC 1 cut(s) 815
AclWI GGATC 2 cut(s) 89, 102
AcoI YGGCCR 3 cut(s) 52, 418, 691
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 4 cut(s) 229, 244, 252, 386
AfiI CCNNNNNNNGG 1 cut(s) 291
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 8 cut(s) 109, 122, 167, 309, 485, 518, 643, 764
AjiI CACGTC 1 cut(s) 494
AluBI AGCT 8 cut(s) 23, 62, 147, 211, 366, 446, 481, 623
AluI AGCT 8 cut(s) 23, 62, 147, 211, 366, 446, 481, 623
Alw26I GTCTC 1 cut(s) 699
AlwI GGATC 2 cut(s) 89, 102
AoxI GGCC 4 cut(s) 52, 418, 691, 733
ApeKI GCWGC 2 cut(s) 16, 827
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 2 cut(s) 104, 647
AsuHPI GGTGA 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BalI TGGCCA 1 cut(s) 693
BamHI GGATCC 1 cut(s) 94
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
BauI CACGAG 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 28, 839
BccI CCATC 4 cut(s) 293, 391, 430, 547
BceAI ACGGC 2 cut(s) 67, 819
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BcoDI GTCTC 1 cut(s) 699
BfaI CTAG 1 cut(s) 749
BisI GCNGC 2 cut(s) 17, 828
BlpI GCTNAGC 1 cut(s) 367
BlsI GCNGC 2 cut(s) 18, 829
BmcAI AGTACT 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 494
BmiI GGNNCC 2 cut(s) 96, 773
BmsI GCATC 3 cut(s) 225, 339, 453
BpiI GAAGAC 1 cut(s) 684
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpmI CTGGAG 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 694
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 841
BseDI CCNNGG 1 cut(s) 694
BseGI GGATG 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 841
BseMII CTCAG 2 cut(s) 81, 615
BseRI GAGGAG 1 cut(s) 67
BseX3I CGGCCG 1 cut(s) 52
BseXI GCAGC 2 cut(s) 28, 839
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 815
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 4 cut(s) 54, 420, 693, 735
BsiEI CGRYCG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 699
BsmBI CGTCTC 1 cut(s) 699
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 4 cut(s) 54, 420, 693, 735
Bsp143I GATC 2 cut(s) 28, 94
Bsp1720I GCTNAGC 1 cut(s) 367
BspACI CCGC 1 cut(s) 815
BspANI GGCC 4 cut(s) 54, 420, 693, 735
BspCNI CTCAG 2 cut(s) 80, 616
BspFNI CGCG 1 cut(s) 815
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 2 cut(s) 96, 773
BspPI GGATC 2 cut(s) 89, 102
BsrDI GCAATG 1 cut(s) 841
BssECI CCNNGG 1 cut(s) 694
BssMI GATC 2 cut(s) 28, 94
BssSI CACGAG 1 cut(s) 592
BssT1I CCWWGG 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 592
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 4 cut(s) 21, 64, 621, 832
BstDEI CTNAG 4 cut(s) 43, 67, 367, 624
BstF5I GGATG 1 cut(s) 558
BstFNI CGCG 1 cut(s) 815
BstKTI GATC 2 cut(s) 31, 97
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 2 cut(s) 28, 94
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 4 cut(s) 72, 594, 716, 812
BstNSI RCATGY 1 cut(s) 550
BstUI CGCG 1 cut(s) 815
BstV1I GCAGC 2 cut(s) 28, 839
BstV2I GAAGAC 1 cut(s) 684
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BstZI CGGCCG 1 cut(s) 52
BsuRI GGCC 4 cut(s) 54, 420, 693, 735
BtgZI GCGATG 1 cut(s) 410
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 558
BtsI GCAGTG 2 cut(s) 679, 726
BtsIMutI CAGTG 2 cut(s) 679, 726
Cac8I GCNNGC 4 cut(s) 21, 64, 621, 832
CciI TCATGA 1 cut(s) 537
CseI GACGC 1 cut(s) 716
Csp6I GTAC 4 cut(s) 228, 243, 251, 385
CviAII CATG 5 cut(s) 197, 455, 471, 538, 547
CviQI GTAC 4 cut(s) 228, 243, 251, 385
DdeI CTNAG 4 cut(s) 43, 67, 367, 624
DpnI GATC 2 cut(s) 30, 96
DpnII GATC 2 cut(s) 28, 94
EaeI YGGCCR 3 cut(s) 52, 418, 691
EagI CGGCCG 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 694
Eco52I CGGCCG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 694
EcoT22I ATGCAT 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 694
Esp3I CGTCTC 1 cut(s) 699
FaeI CATG 5 cut(s) 200, 458, 474, 541, 550
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 504
FatI CATG 5 cut(s) 196, 454, 470, 537, 546
Fnu4HI GCNGC 2 cut(s) 17, 828
FokI GGATG 1 cut(s) 565
Fsp4HI GCNGC 2 cut(s) 17, 828
FspBI CTAG 1 cut(s) 749
GluI GCNGC 2 cut(s) 17, 828
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 4 cut(s) 54, 420, 693, 735
HgaI GACGC 1 cut(s) 716
Hin1II CATG 5 cut(s) 200, 458, 474, 541, 550
HindIII AAGCTT 3 cut(s) 145, 209, 364
HinfI GANTC 1 cut(s) 782
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 5 cut(s) 70, 99, 290, 377, 704
Hpy188III TCNNGA 3 cut(s) 346, 538, 779
Hpy8I GTNNAC 1 cut(s) 630
HpyAV CCTTC 6 cut(s) 94, 515, 569, 637, 785, 786
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 2 cut(s) 237, 493
HpyCH4V TGCA 7 cut(s) 16, 130, 216, 359, 466, 724, 799
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 594, 716, 812
HpyF3I CTNAG 4 cut(s) 43, 67, 367, 624
HpySE526I ACGT 2 cut(s) 237, 493
Hsp92II CATG 5 cut(s) 200, 458, 474, 541, 550
Kzo9I GATC 2 cut(s) 28, 94
LmnI GCTCC 4 cut(s) 80, 443, 478, 771
LpnPI CCDG 3 cut(s) 9, 438, 792
Lsp1109I GCAGC 2 cut(s) 28, 839
LweI GCATC 3 cut(s) 225, 339, 453
MaeI CTAG 1 cut(s) 749
MaeII ACGT 2 cut(s) 237, 493
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 30, 96
MboI GATC 2 cut(s) 28, 94
MboII GAAGA 2 cut(s) 530, 689
MflI RGATCY 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 4 cut(s) 134, 158, 310, 541
MluNI TGGCCA 1 cut(s) 693
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 3 cut(s) 88, 311, 746
Mox20I TGGCCA 1 cut(s) 693
Mph1103I ATGCAT 1 cut(s) 468
MroXI GAANNNNTTC 2 cut(s) 104, 647
MscI TGGCCA 1 cut(s) 693
MseI TTAA 5 cut(s) 149, 260, 297, 327, 822
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 371
MvnI CGCG 1 cut(s) 815
MwoI GCNNNNNNNGC 4 cut(s) 72, 594, 716, 812
NdeII GATC 2 cut(s) 28, 94
NlaIII CATG 5 cut(s) 200, 458, 474, 541, 550
NlaIV GGNNCC 2 cut(s) 96, 773
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 550
PagI TCATGA 1 cut(s) 537
PciI ACATGT 1 cut(s) 546
PctI GAATGC 1 cut(s) 371
PdmI GAANNNNTTC 2 cut(s) 104, 647
PfeI GAWTC 1 cut(s) 782
PkrI GCNGC 2 cut(s) 18, 829
PscI ACATGT 1 cut(s) 546
PspN4I GGNNCC 2 cut(s) 96, 773
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 4 cut(s) 229, 244, 252, 386
RsaNI GTAC 4 cut(s) 228, 243, 251, 385
RseI CAYNNNNRTG 1 cut(s) 551
SaqAI TTAA 5 cut(s) 149, 260, 297, 327, 822
SatI GCNGC 2 cut(s) 17, 828
Sau3AI GATC 2 cut(s) 28, 94
ScaI AGTACT 1 cut(s) 252
SfaNI GCATC 3 cut(s) 225, 339, 453
SmiMI CAYNNNNRTG 1 cut(s) 551
Sse9I AATT 4 cut(s) 134, 158, 310, 541
SsiI CCGC 1 cut(s) 815
SspI AATATT 3 cut(s) 35, 325, 729
SspMI CTAG 1 cut(s) 749
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 2 cut(s) 240, 496
TaqI TCGA 1 cut(s) 738
TasI AATT 4 cut(s) 134, 158, 310, 541
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 1 cut(s) 782
Tru1I TTAA 5 cut(s) 149, 260, 297, 327, 822
Tru9I TTAA 5 cut(s) 149, 260, 297, 327, 822
TscAI CASTG 2 cut(s) 679, 726
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 16, 827
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 3 cut(s) 471, 554, 588
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 2 cut(s) 679, 726
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmnI GAANNNNTTC 2 cut(s) 104, 647
XspI CTAG 1 cut(s) 749
ZrmI AGTACT 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.