RchiOBHm_Chr4g0407721

Vacuolar protein sorting-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000415
Physical Location & Seq
Forward (+)
30061995 .. 30065070
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37894

Sequence Viewer

Length: 936 bp
ATGGGTTTCACCTTTTGGTTACTTGCACATGCAAAGGTCGAATCTGTAAAATCAAAGGAAGTGGCTGAACAGAGGATGCTCCTGAAGAAAAGCTGGTTTTCATTTAGATGGCGTACGCCTGATGAATCTGATGATGATACTTCTGAGGGATCACAGTCACCAGAAGAAAGACTGACTGAAGAGGAGTGGCAAGCAATTAATAAGTTACTAAGTTACCAGCCAGATGAAACATTGGCATCTCACTCAGGAAAGGACATGCCGAATATGATCCGGTTTATGGTAACTGTGTCAGTTGATCGGGCTGCTGCTAGGATCGTTGATATAAATCACACTGAGATTTTGTGTTGTAAATTTGAGCAACTTCAAGTGTCTACGAAGTTTAAACATCAAAGTACATGCTGTGATGTGTCATGCAGATTCTATGGTCTGTATGCACCGGAAGGCTCGCTTGCTCAGGGGATTGGCAATTCTGTGGCTACATGGCGACCTTGTTTTCTTGTGTTGTCGGGGACAAATATTTGTGTTTTGGAGTCTGAGAAGTCGCAGACTTATCAGCGATACTCCAGCATGGCTGGTGGACAAGTATGTGAGGTTCCTCCTACAACAAGTATTGGTGGTTCACCATTTGGCCTTGCTGTGATTCACAGGGGGATGGACACTCAAAAGGCTCCCTCTTCAGTTGATGTCTTGGGAGAAACAATTGATCGTGTTGCTGAGATTGGTGAGCCTCCTCAGACCGGCAATTCTAAAACAGCTGACCTTGTCATTAATGGGGCATTGGTGGAGACAAAGTTATCTATTTATGGAAAGGTTGGTTTTACTTTTTTGGTGGGTCCATTTTGTCAAAGTATCTACAGGATCCTCAATCTCATCATTTTTGGTTTTTGCCATACGGGTGATAAAGGTGCTGAAGAACTTGATGAGACTGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 Chorein_N Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

311

Amino Acids

34.35

Weight (kDa)

5.1

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 371
AclWI GGATC 5 cut(s) 157, 262, 320, 853, 866
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 4 cut(s) 104, 198, 660, 930
AfaI GTAC 2 cut(s) 115, 394
AfiI CCNNNNNNNGG 2 cut(s) 277, 737
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 2 cut(s) 93, 755
AluI AGCT 2 cut(s) 93, 755
Alw26I GTCTC 2 cut(s) 779, 917
AlwI GGATC 5 cut(s) 157, 262, 320, 853, 866
AoxI GGCC 1 cut(s) 628
ApeKI GCWGC 2 cut(s) 302, 305
ApoI RAATTY 1 cut(s) 350
AseI ATTAAT 2 cut(s) 198, 768
AspS9I GGNCC 1 cut(s) 833
AsuHPI GGTGA 4 cut(s) 150, 612, 734, 908
AvaII GGWCC 1 cut(s) 833
BamHI GGATCC 1 cut(s) 858
BbvI GCAGC 2 cut(s) 289, 292
BccI CCATC 2 cut(s) 102, 646
BcoDI GTCTC 2 cut(s) 779, 917
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 853
BisI GCNGC 2 cut(s) 303, 306
BlsI GCNGC 2 cut(s) 304, 307
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 833
BmiI GGNNCC 4 cut(s) 594, 669, 834, 860
BmsI GCATC 3 cut(s) 66, 245, 919
BpmI CTGGAG 1 cut(s) 547
Bpu10I CCTNAGC 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 324
BsaWI WCCGGW 2 cut(s) 270, 436
BsaXI ACNNNNNCTCC 2 cut(s) 776, 806
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 737
Bse118I RCCGGY 1 cut(s) 737
Bse8I GATNNNNATC 1 cut(s) 324
BseGI GGATG 2 cut(s) 81, 657
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 277, 737
BseMII CTCAG 7 cut(s) 135, 258, 324, 467, 525, 705, 746
BseRI GAGGAG 2 cut(s) 197, 720
BseXI GCAGC 2 cut(s) 289, 292
BshFI GGCC 1 cut(s) 630
BsiSI CCGG 3 cut(s) 271, 437, 738
BsiWI CGTACG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 2 cut(s) 277, 737
BsmAI GTCTC 2 cut(s) 779, 917
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 1 cut(s) 630
Bsp143I GATC 6 cut(s) 149, 267, 295, 312, 703, 858
BspANI GGCC 1 cut(s) 630
BspCNI CTCAG 7 cut(s) 136, 257, 325, 466, 526, 706, 745
BspLI GGNNCC 4 cut(s) 594, 669, 834, 860
BspPI GGATC 5 cut(s) 157, 262, 320, 853, 866
BsrFI RCCGGY 1 cut(s) 737
BssAI RCCGGY 1 cut(s) 737
BssMI GATC 6 cut(s) 149, 267, 295, 312, 703, 858
Bst4CI ACNGT 2 cut(s) 156, 286
Bst6I CTCTTC 2 cut(s) 174, 679
BstC8I GCNNGC 3 cut(s) 192, 446, 450
BstDEI CTNAG 8 cut(s) 144, 209, 244, 333, 453, 534, 714, 732
BstF5I GGATG 2 cut(s) 81, 657
BstKTI GATC 6 cut(s) 152, 270, 298, 315, 706, 861
BstMAI GTCTC 2 cut(s) 779, 917
BstMBI GATC 6 cut(s) 149, 267, 295, 312, 703, 858
BstNSI RCATGY 3 cut(s) 32, 259, 399
BstSFI CTRYAG 1 cut(s) 853
BstV1I GCAGC 2 cut(s) 289, 292
BstX2I RGATCY 1 cut(s) 858
BstYI RGATCY 1 cut(s) 858
BsuRI GGCC 1 cut(s) 630
BtsCI GGATG 2 cut(s) 81, 657
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 3 cut(s) 192, 446, 450
Cfr10I RCCGGY 1 cut(s) 737
Cfr13I GGNCC 1 cut(s) 833
Csp6I GTAC 2 cut(s) 114, 393
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 6 cut(s) 29, 256, 396, 411, 480, 568
CviQI GTAC 2 cut(s) 114, 393
DdeI CTNAG 8 cut(s) 144, 209, 244, 333, 453, 534, 714, 732
DpnI GATC 6 cut(s) 151, 269, 297, 314, 705, 860
DpnII GATC 6 cut(s) 149, 267, 295, 312, 703, 858
DraI TTTAAA 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 174, 679
EarI CTCTTC 2 cut(s) 174, 679
Eco47I GGWCC 1 cut(s) 833
Eco57I CTGAAG 4 cut(s) 104, 198, 660, 930
FaeI CATG 6 cut(s) 32, 259, 399, 414, 483, 571
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 523
FatI CATG 6 cut(s) 28, 255, 395, 410, 479, 567
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 303, 306
FokI GGATG 2 cut(s) 88, 664
Fsp4HI GCNGC 2 cut(s) 303, 306
FspBI CTAG 1 cut(s) 309
GluI GCNGC 2 cut(s) 303, 306
GsuI CTGGAG 1 cut(s) 547
HaeIII GGCC 1 cut(s) 630
HapII CCGG 3 cut(s) 271, 437, 738
Hin1II CATG 6 cut(s) 32, 259, 399, 414, 483, 571
HinfI GANTC 5 cut(s) 41, 125, 417, 530, 640
HpaII CCGG 3 cut(s) 271, 437, 738
HphI GGTGA 4 cut(s) 150, 612, 734, 908
Hpy166II GTNNAC 3 cut(s) 372, 578, 620
Hpy188I TCNGA 4 cut(s) 130, 145, 535, 735
Hpy188III TCNNGA 2 cut(s) 82, 246
Hpy8I GTNNAC 3 cut(s) 372, 578, 620
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 2 cut(s) 156, 286
HpyCH4V TGCA 4 cut(s) 26, 32, 414, 434
HpyF3I CTNAG 8 cut(s) 144, 209, 244, 333, 453, 534, 714, 732
Hsp92II CATG 6 cut(s) 32, 259, 399, 414, 483, 571
Kzo9I GATC 6 cut(s) 149, 267, 295, 312, 703, 858
LmnI GCTCC 2 cut(s) 84, 673
Lsp1109I GCAGC 2 cut(s) 289, 292
LweI GCATC 3 cut(s) 66, 245, 919
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 5 cut(s) 18, 156, 204, 212, 280
MalI GATC 6 cut(s) 151, 269, 297, 314, 705, 860
MboI GATC 6 cut(s) 149, 267, 295, 312, 703, 858
MboII GAAGA 5 cut(s) 97, 176, 191, 666, 923
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 1 cut(s) 858
MluCI AATT 5 cut(s) 195, 350, 466, 699, 742
MlyI GAGTC 1 cut(s) 539
MnlI CCTC 9 cut(s) 66, 139, 175, 583, 606, 682, 738, 741, 872
MseI TTAA 3 cut(s) 198, 381, 768
MslI CAYNNNNRTG 2 cut(s) 106, 894
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 3 cut(s) 271, 437, 738
MssI GTTTAAAC 1 cut(s) 382
MunI CAATTG 1 cut(s) 699
NdeII GATC 6 cut(s) 149, 267, 295, 312, 703, 858
NlaIII CATG 6 cut(s) 32, 259, 399, 414, 483, 571
NlaIV GGNNCC 4 cut(s) 594, 669, 834, 860
NmuCI GTSAC 1 cut(s) 156
NspI RCATGY 3 cut(s) 32, 259, 399
PfeI GAWTC 4 cut(s) 41, 125, 417, 640
Pfl23II CGTACG 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 761
PkrI GCNGC 2 cut(s) 304, 307
PleI GAGTC 1 cut(s) 538
PmeI GTTTAAAC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 538
PshBI ATTAAT 2 cut(s) 198, 768
PspLI CGTACG 1 cut(s) 113
PspN4I GGNNCC 4 cut(s) 594, 669, 834, 860
PspPI GGNCC 1 cut(s) 833
PsrI GAACNNNNNNTAC 4 cut(s) 576, 601, 608, 633
PsuI RGATCY 1 cut(s) 858
PsyI GACNNNGTC 1 cut(s) 761
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 2 cut(s) 115, 394
RsaNI GTAC 2 cut(s) 114, 393
RseI CAYNNNNRTG 2 cut(s) 106, 894
SaqAI TTAA 3 cut(s) 198, 381, 768
SatI GCNGC 2 cut(s) 303, 306
Sau3AI GATC 6 cut(s) 149, 267, 295, 312, 703, 858
Sau96I GGNCC 1 cut(s) 833
SchI GAGTC 1 cut(s) 539
SetI ASST 9 cut(s) 14, 39, 95, 490, 594, 757, 762, 813, 907
SfaNI GCATC 3 cut(s) 66, 245, 919
SfcI CTRYAG 1 cut(s) 853
SinI GGWCC 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 106, 894
Sse9I AATT 5 cut(s) 195, 350, 466, 699, 742
SspI AATATT 1 cut(s) 517
SspMI CTAG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 156, 286
TaqI TCGA 1 cut(s) 39
TasI AATT 5 cut(s) 195, 350, 466, 699, 742
TatI WGTACW 1 cut(s) 392
TfiI GAWTC 4 cut(s) 41, 125, 417, 640
Tru1I TTAA 3 cut(s) 198, 381, 768
Tru9I TTAA 3 cut(s) 198, 381, 768
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 156
TseI GCWGC 2 cut(s) 302, 305
Tsp45I GTSAC 1 cut(s) 156
TspDTI ATGAA 3 cut(s) 90, 138, 240
TspRI CASTG 1 cut(s) 337
Tth111I GACNNNGTC 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 833
VspI ATTAAT 2 cut(s) 198, 768
XapI RAATTY 1 cut(s) 350
XceI RCATGY 3 cut(s) 32, 259, 399
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.